| Chain sequence(s) |
A: EEMDETYDKLVRAFNFVVGMVIFVLLIRLFASIKDGNTKLAIIYTLLILALLVGLIAINLR
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:09)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:09)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:09)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:09)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:09)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:26)
[INFO] Main: Simulation completed successfully. (00:01:27)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | E | A | -3.4169 | |
| 2 | E | A | -3.1910 | |
| 3 | M | A | -1.9160 | |
| 4 | D | A | -3.4719 | |
| 5 | E | A | -3.8786 | |
| 6 | T | A | -2.1457 | |
| 7 | Y | A | -1.0905 | |
| 8 | D | A | -2.6413 | |
| 9 | K | A | -2.3083 | |
| 10 | L | A | 0.1187 | |
| 11 | V | A | 0.1918 | |
| 12 | R | A | -0.4393 | |
| 13 | A | A | 1.2044 | |
| 14 | F | A | 2.5785 | |
| 15 | N | A | 2.0497 | |
| 16 | F | A | 3.3393 | |
| 17 | V | A | 3.7097 | |
| 18 | V | A | 0.0000 | |
| 19 | G | A | 2.7376 | |
| 20 | M | A | 3.4117 | |
| 21 | V | A | 2.8624 | |
| 22 | I | A | 0.0000 | |
| 23 | F | A | 3.4736 | |
| 24 | V | A | 2.9245 | |
| 25 | L | A | 2.2997 | |
| 26 | L | A | 2.6487 | |
| 27 | I | A | 2.7359 | |
| 28 | R | A | 0.8806 | |
| 29 | L | A | 1.9819 | |
| 30 | F | A | 2.2760 | |
| 31 | A | A | 0.3825 | |
| 32 | S | A | 0.0000 | |
| 33 | I | A | 0.9576 | |
| 34 | K | A | -1.4905 | |
| 35 | D | A | -2.1003 | |
| 36 | G | A | -1.5173 | |
| 37 | N | A | -1.4755 | |
| 38 | T | A | -0.5806 | |
| 39 | K | A | -0.7527 | |
| 40 | L | A | 0.3644 | |
| 41 | A | A | 1.2680 | |
| 42 | I | A | 2.4433 | |
| 43 | I | A | 2.4996 | |
| 44 | Y | A | 2.2499 | |
| 45 | T | A | 2.1659 | |
| 46 | L | A | 3.2763 | |
| 47 | L | A | 2.7274 | |
| 48 | I | A | 0.0000 | |
| 49 | L | A | 2.9824 | |
| 50 | A | A | 2.2610 | |
| 51 | L | A | 2.2859 | |
| 52 | L | A | 2.8114 | |
| 53 | V | A | 3.1070 | |
| 54 | G | A | 1.6970 | |
| 55 | L | A | 2.2963 | |
| 56 | I | A | 2.5653 | |
| 57 | A | A | 1.4608 | |
| 58 | I | A | 0.9993 | |
| 59 | N | A | -0.1953 | |
| 60 | L | A | 0.9050 | |
| 61 | R | A | -1.0333 |