Project name: NaV17_HW1_111_3

Status: done

Started: 2026-02-11 01:30:13
Settings
Chain sequence(s) A: EEMDETYDKLVRAFNFVVGMVIFVLLIRLFASIKDGNTKLAIIYTLLILALLVGLIAINLR
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:09)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:09)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:09)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:09)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:09)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:26)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:27)
Show buried residues

Minimal score value
-3.8786
Maximal score value
3.7097
Average score
0.8112
Total score value
49.486

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E A -3.4169
2 E A -3.1910
3 M A -1.9160
4 D A -3.4719
5 E A -3.8786
6 T A -2.1457
7 Y A -1.0905
8 D A -2.6413
9 K A -2.3083
10 L A 0.1187
11 V A 0.1918
12 R A -0.4393
13 A A 1.2044
14 F A 2.5785
15 N A 2.0497
16 F A 3.3393
17 V A 3.7097
18 V A 0.0000
19 G A 2.7376
20 M A 3.4117
21 V A 2.8624
22 I A 0.0000
23 F A 3.4736
24 V A 2.9245
25 L A 2.2997
26 L A 2.6487
27 I A 2.7359
28 R A 0.8806
29 L A 1.9819
30 F A 2.2760
31 A A 0.3825
32 S A 0.0000
33 I A 0.9576
34 K A -1.4905
35 D A -2.1003
36 G A -1.5173
37 N A -1.4755
38 T A -0.5806
39 K A -0.7527
40 L A 0.3644
41 A A 1.2680
42 I A 2.4433
43 I A 2.4996
44 Y A 2.2499
45 T A 2.1659
46 L A 3.2763
47 L A 2.7274
48 I A 0.0000
49 L A 2.9824
50 A A 2.2610
51 L A 2.2859
52 L A 2.8114
53 V A 3.1070
54 G A 1.6970
55 L A 2.2963
56 I A 2.5653
57 A A 1.4608
58 I A 0.9993
59 N A -0.1953
60 L A 0.9050
61 R A -1.0333
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Laboratory of Theory of Biopolymers 2018