Project name: b5r_agg

Status: done

Started: 2025-02-26 05:26:01
Settings
Chain sequence(s) A: QVQLVQSAEVKKPGSSVKVSCKSSGGTFSDYAINWVRQAPGQGLEWMGRILPIVGVPNYAQKFQGRVTITADKSSSTAYKEVSGLRSEDTAVYYCARRSGINGHGLDVWGQGTTVIVSSASTKGPSVFPLAPSSGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEP
C: STCTVPTMNNAKLTSTNDKQKVTFTCDSGYHSLDPNAVCETDKWKYENPCKKMCTVSDYVSELYDKPLYEVNSTMTLSCNGETKYFRCEKNGNTSWNDTVTCP
B: DIVMTQSPLSLPVTPGEPASISCRSSQSLLNTNGYNYLEWYLHKPGQSPQLLIYLGSHRASGVPDRFSGSGSGTDFTLKISRAEPEDVGVYYCMQTLQTQGYTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRG
input PDB
Selected Chain(s) A,C,B
Distance of aggregation 10 Å
FoldX usage No
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       runJob:   FoldX not utilized. Treating input pdb file as it was already optimized.    (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:01)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:05)
Show buried residues

Minimal score value
-3.9699
Maximal score value
2.5086
Average score
-0.724
Total score value
-387.3163

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.6596
2 V A -1.3067
3 Q A -1.1178
4 L A 0.1118
5 V A 1.0953
6 Q A 0.0000
7 S A -0.3714
9 A A -0.4706
10 E A -1.2672
11 V A -0.3764
12 K A -1.5280
13 K A -2.3544
14 P A -2.2508
15 G A -1.6052
16 S A -1.1433
17 S A -0.9523
18 V A -0.8515
19 K A -1.5762
20 V A -0.4551
21 S A -0.1600
22 C A 0.0000
23 K A -0.1358
24 S A 0.0000
25 S A -0.8218
26 G A -1.3364
27 G A -1.1084
28 T A -0.4211
29 F A -0.3259
30 S A -0.0720
31 D A 0.2123
32 Y A 0.0916
33 A A 0.0000
34 I A 0.0000
35 N A 0.0000
36 W A 0.0000
37 V A 0.0000
38 R A 0.0000
39 Q A -0.6999
40 A A -1.0049
41 P A -1.1042
42 G A -1.2513
43 Q A -1.7864
44 G A -1.1816
45 L A -0.6233
46 E A -0.5809
47 W A 0.0000
48 M A 0.0000
49 G A 0.0000
50 R A -0.0732
51 I A 0.0000
52 L A 0.0000
53 P A 0.0000
54 I A 1.7292
55 V A 2.5086
56 G A 1.4351
57 V A 2.0901
58 P A 0.7690
59 N A -0.2388
60 Y A -0.8536
61 A A -1.6102
62 Q A -2.7767
63 K A -2.7934
64 F A 0.0000
65 Q A -2.6002
66 G A -1.8043
67 R A -1.6681
68 V A 0.0000
69 T A -0.7206
70 I A 0.0000
71 T A 0.0419
72 A A -0.2677
73 D A -1.1481
74 K A -1.4108
75 S A -0.9684
76 S A -0.8318
77 S A -0.9355
78 T A 0.0000
79 A A 0.0000
80 Y A -0.2322
81 K A 0.0000
82 E A -1.0876
83 V A -0.7618
84 S A -0.9280
85 G A -1.0890
86 L A -1.9215
87 R A -2.8565
88 S A -2.3019
89 E A -2.5229
90 D A -1.5042
91 T A -0.7765
92 A A 0.0000
93 V A 0.2128
94 Y A 0.0945
95 Y A -0.0431
96 C A 0.0000
97 A A 0.0000
98 R A 0.0000
99 R A 0.0000
100 S A 0.0000
101 G A 0.4304
102 I A 1.6726
103 N A 0.0000
104 G A 0.0000
105 H A 0.0229
106 G A 0.0000
107 L A -0.2025
108 D A -0.3718
109 V A -0.4405
110 W A -0.4256
111 G A 0.0000
112 Q A -0.9807
113 G A -0.5521
114 T A -0.3777
115 T A 0.0108
116 V A 0.1622
117 I A -0.4267
118 V A 0.0000
119 S A -1.2740
120 S A -0.8979
121 A A -0.6508
122 S A -0.4829
123 T A -0.8050
124 K A -1.3068
125 G A -1.4824
126 P A -0.5665
127 S A -0.2239
128 V A -0.0182
129 F A 0.0000
130 P A -0.7078
131 L A 0.0000
132 A A -0.5853
133 P A 0.0000
134 S A -0.2566
135 S A -0.3694
141 G A -0.6333
142 T A -0.4875
143 A A -0.3511
144 A A 0.0000
145 L A 0.0000
146 G A 0.0000
147 C A 0.0000
148 L A 0.1934
149 V A 0.0000
150 K A -0.2403
151 D A -0.5755
152 Y A 0.0000
153 F A -0.4355
154 P A -0.7986
155 E A -1.0085
156 P A -1.0285
157 V A -0.8586
158 T A -0.5289
159 V A -0.0978
160 S A -0.2497
161 W A 0.0000
162 N A -0.8803
163 S A -0.5650
164 G A -0.6080
165 A A -0.2119
166 L A -0.0284
167 T A -0.1839
168 S A -0.1751
169 G A -0.0738
170 V A 0.2665
171 H A -0.0899
172 T A 0.0262
173 F A 0.0000
174 P A -0.2418
175 A A 0.3582
176 V A 0.6387
177 L A 1.2945
178 Q A 0.2446
179 S A -0.0443
180 S A -0.1869
181 G A 0.0690
182 L A 0.0875
183 Y A 0.3376
184 S A 0.2666
185 L A 0.4620
186 S A 0.1431
187 S A 0.0000
188 V A 0.0000
189 V A 0.0000
190 T A -0.1123
191 V A 0.0000
192 P A -0.5729
193 S A -0.6543
194 S A -0.7893
195 S A -0.7643
196 L A -0.8951
197 G A -0.9440
198 T A -0.9297
199 Q A -1.3536
200 T A -1.2364
201 Y A -0.9458
202 I A -1.2587
203 C A 0.0000
204 N A -1.2505
205 V A 0.0000
206 N A -1.8022
207 H A 0.0000
208 K A -2.8268
209 P A -1.7232
210 S A -1.8320
211 N A -2.4809
212 T A -1.8509
213 K A -2.2625
214 V A -0.7273
215 D A -2.0304
216 K A -2.0502
217 R A -2.7495
218 V A 0.0000
219 E A -2.3616
220 P A -1.5668
1 D B -1.7049
2 I B 0.0000
3 V B 0.8866
4 M B 0.0000
5 T B -0.6334
6 Q B 0.0000
7 S B -0.2325
8 P B 0.3585
9 L B 1.1386
10 S B 0.3174
11 L B 0.1796
12 P B -0.4664
13 V B -0.6066
14 T B -1.2026
15 P B -1.3840
16 G B -1.7432
17 E B -2.2923
18 P B -1.9863
19 A B -1.0596
20 S B -0.6080
21 I B 0.0000
22 S B -0.9118
23 C B 0.0000
24 R B -2.0648
25 S B -0.8818
26 S B -0.5418
27 Q B -1.0403
28 S B -0.7672
29 L B 0.0000
30 L B 0.3314
31 N B -0.4598
32 T B -0.6756
33 N B -0.7625
34 G B -0.4364
35 Y B 0.0000
36 N B -0.0877
37 Y B 0.1152
38 L B 0.0000
39 E B 0.0000
40 W B 0.0000
41 Y B 0.0000
42 L B -0.3791
43 H B -0.9170
44 K B -1.4280
45 P B -0.9913
46 G B -1.4439
47 Q B -1.9956
48 S B -1.4462
49 P B 0.0000
50 Q B -1.4621
51 L B 0.0000
52 L B 0.0000
53 I B 0.0000
54 Y B 0.0000
55 L B 0.0000
56 G B 0.0000
57 S B -0.5711
58 H B 0.0000
59 R B -0.7140
60 A B 0.0000
61 S B -0.1828
62 G B -0.6701
63 V B -0.5548
64 P B -1.1061
65 D B -2.4713
66 R B -2.0175
67 F B 0.0000
68 S B -0.9181
69 G B -0.6102
70 S B -0.7646
71 G B -1.0726
72 S B -0.9564
73 G B -0.8873
74 T B -1.5107
75 D B -2.2242
76 F B 0.0000
77 T B -0.9785
78 L B 0.0000
79 K B -1.2379
80 I B 0.0000
81 S B -2.1245
82 R B -3.1275
83 A B -2.0725
84 E B -1.8530
85 P B -1.3233
86 E B -2.0615
87 D B 0.0000
88 V B -0.4287
89 G B 0.0000
90 V B -0.0171
91 Y B 0.0000
92 Y B 0.0000
93 C B 0.0000
94 M B 0.0000
95 Q B 0.0000
96 T B -0.0828
97 L B -0.0035
98 Q B -0.8703
99 T B -0.7069
100 Q B -1.2549
101 G B -0.7870
102 Y B -0.1505
103 T B 0.1778
104 F B 0.0000
105 G B -0.2969
106 Q B -0.5221
107 G B -0.4542
108 T B 0.0000
109 K B -0.2013
110 L B 0.0000
111 E B -0.7147
112 I B -0.5813
113 K B -1.0724
114 R B -0.7422
115 T B 0.2190
116 V B 1.1784
117 A B 0.4229
118 A B 0.0299
119 P B 0.0000
120 S B -0.0926
121 V B 0.2275
122 F B 0.3770
123 I B 0.1411
124 F B 0.0000
125 P B -0.5846
126 P B -0.5934
127 S B -1.4051
128 D B -2.5760
129 E B -2.2995
130 Q B 0.0000
131 L B -1.8490
132 K B -2.6121
133 S B -1.6171
134 G B -1.1572
135 T B -0.8705
136 A B 0.0000
137 S B -0.0877
138 V B 0.0000
139 V B 0.0000
140 C B 0.0000
141 L B 0.0000
142 L B 0.0000
143 N B -0.5134
144 N B -1.0434
145 F B 0.0000
146 Y B -0.8878
147 P B -1.4746
148 R B -2.8874
149 E B -3.2220
150 A B -2.2793
151 K B -2.2476
152 V B -1.0275
153 Q B -0.5751
154 W B 0.0000
155 K B -0.7354
156 V B 0.0000
157 D B -2.0575
158 N B -1.4775
159 A B -0.3067
160 L B 0.7128
161 Q B -0.2190
162 S B -0.5502
163 G B -1.0448
164 N B -1.1056
165 S B -1.4339
166 Q B -1.6589
167 E B -2.0352
168 S B -0.8482
169 V B -0.7477
170 T B -0.9801
171 E B -2.2965
172 Q B -1.9588
173 D B -2.4350
174 S B -2.0611
175 K B -2.5901
176 D B -2.3310
177 S B 0.0000
178 T B 0.0000
179 Y B -1.3655
180 S B 0.0000
181 L B 0.0000
182 S B 0.0000
183 S B 0.0000
184 T B -0.8754
185 L B 0.0000
186 T B -0.3890
187 L B -0.3755
188 S B -0.7653
189 K B -1.6799
190 A B -1.3681
191 D B -1.7966
192 Y B 0.0000
193 E B -2.7446
194 K B -3.0427
195 H B -2.8350
196 K B -2.9850
197 V B -1.7843
198 Y B 0.0000
199 A B 0.0000
200 C B 0.0000
201 E B -0.9023
202 V B 0.0000
203 T B -1.1449
204 H B 0.0000
205 Q B -1.6996
206 G B -0.2221
207 L B -0.2572
208 S B -0.4385
209 S B -0.3403
210 P B -0.4589
211 V B 0.0830
212 T B -0.6018
213 K B -1.0569
214 S B -0.8524
215 F B -0.9808
216 N B -2.1498
217 R B -2.1358
218 G B -1.3351
19 S C -1.2943
20 T C -1.7065
21 C C -1.1717
22 T C 0.1394
23 V C 1.6134
24 P C 0.6051
25 T C -0.2179
26 M C 0.0000
27 N C -2.0188
28 N C -2.0569
29 A C -1.7420
30 K C -1.8719
31 L C -0.2288
32 T C -0.5022
33 S C -0.0579
34 T C 0.2272
39 N C -1.9896
40 D C -2.8585
41 K C -3.0733
42 Q C -2.4828
43 K C -2.2981
44 V C -0.8063
45 T C -0.7351
46 F C 0.0000
47 T C -1.1118
48 C C 0.0000
49 D C -1.6524
50 S C -0.9712
51 G C -0.8629
52 Y C -1.0701
53 H C -1.0022
54 S C 0.0000
55 L C 0.0275
56 D C -1.5638
57 P C -1.0352
58 N C -1.1011
59 A C 0.0000
60 V C -1.6542
61 C C 0.0000
62 E C -2.3634
63 T C -1.9473
64 D C -3.0464
65 K C -2.2642
66 W C 0.0000
67 K C -1.6943
68 Y C -0.8708
69 E C -1.6208
70 N C -1.1481
71 P C -1.1145
72 C C 0.0000
73 K C -1.6398
74 K C -1.6948
75 M C 0.0000
76 C C 0.0000
77 T C -0.1169
78 V C 0.0000
79 S C 0.0000
80 D C -0.4612
81 Y C 0.5898
82 V C 0.0000
83 S C -0.6370
84 E C -0.6956
85 L C 1.0239
86 Y C 0.4069
87 D C -1.7647
88 K C -1.4815
89 P C 0.0000
90 L C 0.0000
91 Y C -0.9546
92 E C -1.9155
93 V C -1.7615
94 N C -2.2751
95 S C -1.4713
96 T C -1.0584
97 M C 0.0000
98 T C 0.2102
99 L C -0.0348
100 S C -0.7324
101 C C -0.9491
102 N C -1.7312
103 G C -1.6292
104 E C -1.9540
105 T C -0.8445
106 K C -0.2225
107 Y C 0.3590
108 F C 0.0000
109 R C -2.4647
110 C C 0.0000
112 E C -3.8194
113 K C -3.9699
114 N C -3.1637
115 G C -2.8393
116 N C -3.3260
117 T C -2.6948
118 S C -2.3187
119 W C -2.1082
120 N C -3.0568
121 D C -2.4110
122 T C -0.9735
123 V C -0.3143
124 T C -0.0891
125 C C 0.0355
126 P C -0.2918
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Laboratory of Theory of Biopolymers 2018