Project name: 2510-12.pdb

Status: done

Started: 2026-03-11 10:09:07
Settings
Chain sequence(s) H: QVQLQQSGPELEKPGASVKISCKASGYSFTDYSMNWVRQSNGKSLEWIGNIDPYSGGTSYNQKFKGKATLTVDKSSSTAYMQLKSLTSEDSAVYYCARGHYYDSTYVYPMDYWGQGTSVTVSS
L: NIMMTQSPSSLAVSVGEKVTMSCKSSQSLLYSSNQKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTISSVKAEDLAVYYCQQYYSYPWTFGGGTKLEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:03:30)
[INFO]       Main:     Simulation completed successfully.                                          (00:03:31)
Show buried residues

Minimal score value
-2.8951
Maximal score value
0.9772
Average score
-0.6043
Total score value
-142.6095

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.4031
2 V H -0.7034
3 Q H -1.5765
4 L H 0.0000
5 Q H -1.7220
6 Q H -1.0597
7 S H -0.9226
8 G H -0.5408
9 P H -0.2295
11 E H -0.1936
12 L H 0.7933
13 E H -0.4720
14 K H -1.6349
15 P H -1.4396
16 G H -1.1951
17 A H -0.9755
18 S H -1.0750
19 V H -0.7996
20 K H -1.4889
21 I H 0.0000
22 S H -0.5870
23 C H 0.0000
24 K H -1.2502
25 A H 0.0000
26 S H -1.0050
27 G H -1.0226
28 Y H -0.5791
29 S H -0.3847
30 F H 0.0000
35 T H -0.1627
36 D H -0.4073
37 Y H 0.2682
38 S H 0.0000
39 M H 0.0000
40 N H 0.0000
41 W H 0.0000
42 V H 0.0000
43 R H 0.0000
44 Q H -1.0024
45 S H -1.6644
46 N H -2.1915
47 G H -1.8840
48 K H -2.4953
49 S H -1.3530
50 L H 0.0000
51 E H -0.8171
52 W H 0.0000
53 I H 0.0000
54 G H 0.0000
55 N H 0.0000
56 I H 0.0000
57 D H -0.2819
58 P H 0.0000
59 Y H 0.5411
62 S H 0.0987
63 G H -0.4206
64 G H -0.4693
65 T H -0.3685
66 S H -0.3124
67 Y H -0.8262
68 N H -1.5836
69 Q H -2.6684
70 K H -2.8951
71 F H 0.0000
72 K H -2.8801
74 G H -1.9542
75 K H -1.8190
76 A H 0.0000
77 T H -0.8353
78 L H 0.0000
79 T H -0.2460
80 V H -0.3231
81 D H -1.0789
82 K H -1.5431
83 S H -1.0543
84 S H -0.8571
85 S H -1.0431
86 T H 0.0000
87 A H 0.0000
88 Y H -0.2360
89 M H 0.0000
90 Q H -1.0751
91 L H 0.0000
92 K H -1.3832
93 S H -1.0510
94 L H 0.0000
95 T H -1.3512
96 S H -1.3569
97 E H -2.0712
98 D H 0.0000
99 S H -0.7688
100 A H 0.0000
101 V H -0.1765
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 A H 0.0000
106 R H 0.0000
107 G H 0.0000
108 H H 0.2964
109 Y H 0.6518
110 Y H 0.6293
111 D H -1.0591
111A S H -0.4111
112B T H 0.1451
112A Y H 0.9772
112 V H 0.0000
113 Y H 0.8683
114 P H 0.0000
115 M H 0.0000
116 D H -0.1059
117 Y H -0.1330
118 W H -0.5880
119 G H 0.0000
120 Q H -1.8068
121 G H -0.9266
122 T H 0.0000
123 S H -0.2703
124 V H 0.0000
125 T H -0.1471
126 V H -0.7200
127 S H -0.5361
128 S H -0.7690
1 N L -1.1219
2 I L 0.0000
3 M L 0.2160
4 M L 0.0000
5 T L -0.7255
6 Q L -0.8204
7 S L -0.7279
8 P L -0.5628
9 S L -0.6699
10 S L -0.8203
11 L L -0.4341
12 A L -0.9051
13 V L -1.1439
14 S L -1.4575
15 V L -1.0891
16 G L -1.6773
17 E L -2.4866
18 K L -2.2202
19 V L 0.0000
20 T L -0.5650
21 M L 0.0000
22 S L -0.7830
23 C L 0.0000
24 K L -1.9367
25 S L 0.0000
26 S L -1.0514
27 Q L -1.5608
28 S L -0.8616
29 L L 0.0000
30 L L -0.3191
31 Y L -0.1778
32 S L -0.7606
33 S L -0.7775
34 N L -1.2250
35 Q L -1.7791
36 K L -1.5495
37 N L 0.0000
38 Y L 0.0000
39 L L 0.0000
40 A L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L 0.0000
44 Q L -0.9972
45 K L -1.5922
46 P L -1.0572
47 G L -1.5319
48 Q L -2.1388
49 S L -1.3402
50 P L 0.0000
51 K L -0.9114
52 L L 0.0000
53 L L 0.0000
54 I L 0.0000
55 Y L 0.2169
56 W L -0.0304
57 A L 0.0000
65 S L -0.4197
66 T L -0.3365
67 R L -1.1464
68 E L -0.7731
69 S L -0.7307
70 G L -0.9614
71 V L 0.0000
72 P L -1.3500
74 D L -2.2223
75 R L -1.6263
76 F L 0.0000
77 T L -0.8045
78 G L 0.0000
79 S L -0.5531
80 G L -1.0158
83 S L -1.1159
84 G L -1.0485
85 T L -1.4737
86 D L -2.0558
87 F L 0.0000
88 T L -0.6906
89 L L 0.0000
90 T L -0.4757
91 I L 0.0000
92 S L -1.5040
93 S L -1.7997
94 V L 0.0000
95 K L -2.0631
96 A L -1.3618
97 E L -1.9154
98 D L 0.0000
99 L L -0.4312
100 A L 0.0000
101 V L -0.4348
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 Q L 0.0000
106 Q L 0.0000
107 Y L 0.0000
108 Y L 0.5551
109 S L 0.1206
114 Y L 0.4240
115 P L -0.3214
116 W L 0.0000
117 T L 0.0362
118 F L 0.0000
119 G L 0.0000
120 G L -0.8255
121 G L 0.0000
122 T L 0.0000
123 K L -1.0535
124 L L 0.0000
125 E L -1.3853
126 I L -1.2006
127 K L -1.9013
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Laboratory of Theory of Biopolymers 2018