| Chain sequence(s) |
H: QVQLQQSGPELEKPGASVKISCKASGYSFTDYSMNWVRQSNGKSLEWIGNIDPYSGGTSYNQKFKGKATLTVDKSSSTAYMQLKSLTSEDSAVYYCARGHYYDSTYVYPMDYWGQGTSVTVSS
L: NIMMTQSPSSLAVSVGEKVTMSCKSSQSLLYSSNQKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTISSVKAEDLAVYYCQQYYSYPWTFGGGTKLEIK input PDB |
| Selected Chain(s) | H,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:03:30)
[INFO] Main: Simulation completed successfully. (00:03:31)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | H | -1.4031 | |
| 2 | V | H | -0.7034 | |
| 3 | Q | H | -1.5765 | |
| 4 | L | H | 0.0000 | |
| 5 | Q | H | -1.7220 | |
| 6 | Q | H | -1.0597 | |
| 7 | S | H | -0.9226 | |
| 8 | G | H | -0.5408 | |
| 9 | P | H | -0.2295 | |
| 11 | E | H | -0.1936 | |
| 12 | L | H | 0.7933 | |
| 13 | E | H | -0.4720 | |
| 14 | K | H | -1.6349 | |
| 15 | P | H | -1.4396 | |
| 16 | G | H | -1.1951 | |
| 17 | A | H | -0.9755 | |
| 18 | S | H | -1.0750 | |
| 19 | V | H | -0.7996 | |
| 20 | K | H | -1.4889 | |
| 21 | I | H | 0.0000 | |
| 22 | S | H | -0.5870 | |
| 23 | C | H | 0.0000 | |
| 24 | K | H | -1.2502 | |
| 25 | A | H | 0.0000 | |
| 26 | S | H | -1.0050 | |
| 27 | G | H | -1.0226 | |
| 28 | Y | H | -0.5791 | |
| 29 | S | H | -0.3847 | |
| 30 | F | H | 0.0000 | |
| 35 | T | H | -0.1627 | |
| 36 | D | H | -0.4073 | |
| 37 | Y | H | 0.2682 | |
| 38 | S | H | 0.0000 | |
| 39 | M | H | 0.0000 | |
| 40 | N | H | 0.0000 | |
| 41 | W | H | 0.0000 | |
| 42 | V | H | 0.0000 | |
| 43 | R | H | 0.0000 | |
| 44 | Q | H | -1.0024 | |
| 45 | S | H | -1.6644 | |
| 46 | N | H | -2.1915 | |
| 47 | G | H | -1.8840 | |
| 48 | K | H | -2.4953 | |
| 49 | S | H | -1.3530 | |
| 50 | L | H | 0.0000 | |
| 51 | E | H | -0.8171 | |
| 52 | W | H | 0.0000 | |
| 53 | I | H | 0.0000 | |
| 54 | G | H | 0.0000 | |
| 55 | N | H | 0.0000 | |
| 56 | I | H | 0.0000 | |
| 57 | D | H | -0.2819 | |
| 58 | P | H | 0.0000 | |
| 59 | Y | H | 0.5411 | |
| 62 | S | H | 0.0987 | |
| 63 | G | H | -0.4206 | |
| 64 | G | H | -0.4693 | |
| 65 | T | H | -0.3685 | |
| 66 | S | H | -0.3124 | |
| 67 | Y | H | -0.8262 | |
| 68 | N | H | -1.5836 | |
| 69 | Q | H | -2.6684 | |
| 70 | K | H | -2.8951 | |
| 71 | F | H | 0.0000 | |
| 72 | K | H | -2.8801 | |
| 74 | G | H | -1.9542 | |
| 75 | K | H | -1.8190 | |
| 76 | A | H | 0.0000 | |
| 77 | T | H | -0.8353 | |
| 78 | L | H | 0.0000 | |
| 79 | T | H | -0.2460 | |
| 80 | V | H | -0.3231 | |
| 81 | D | H | -1.0789 | |
| 82 | K | H | -1.5431 | |
| 83 | S | H | -1.0543 | |
| 84 | S | H | -0.8571 | |
| 85 | S | H | -1.0431 | |
| 86 | T | H | 0.0000 | |
| 87 | A | H | 0.0000 | |
| 88 | Y | H | -0.2360 | |
| 89 | M | H | 0.0000 | |
| 90 | Q | H | -1.0751 | |
| 91 | L | H | 0.0000 | |
| 92 | K | H | -1.3832 | |
| 93 | S | H | -1.0510 | |
| 94 | L | H | 0.0000 | |
| 95 | T | H | -1.3512 | |
| 96 | S | H | -1.3569 | |
| 97 | E | H | -2.0712 | |
| 98 | D | H | 0.0000 | |
| 99 | S | H | -0.7688 | |
| 100 | A | H | 0.0000 | |
| 101 | V | H | -0.1765 | |
| 102 | Y | H | 0.0000 | |
| 103 | Y | H | 0.0000 | |
| 104 | C | H | 0.0000 | |
| 105 | A | H | 0.0000 | |
| 106 | R | H | 0.0000 | |
| 107 | G | H | 0.0000 | |
| 108 | H | H | 0.2964 | |
| 109 | Y | H | 0.6518 | |
| 110 | Y | H | 0.6293 | |
| 111 | D | H | -1.0591 | |
| 111A | S | H | -0.4111 | |
| 112B | T | H | 0.1451 | |
| 112A | Y | H | 0.9772 | |
| 112 | V | H | 0.0000 | |
| 113 | Y | H | 0.8683 | |
| 114 | P | H | 0.0000 | |
| 115 | M | H | 0.0000 | |
| 116 | D | H | -0.1059 | |
| 117 | Y | H | -0.1330 | |
| 118 | W | H | -0.5880 | |
| 119 | G | H | 0.0000 | |
| 120 | Q | H | -1.8068 | |
| 121 | G | H | -0.9266 | |
| 122 | T | H | 0.0000 | |
| 123 | S | H | -0.2703 | |
| 124 | V | H | 0.0000 | |
| 125 | T | H | -0.1471 | |
| 126 | V | H | -0.7200 | |
| 127 | S | H | -0.5361 | |
| 128 | S | H | -0.7690 | |
| 1 | N | L | -1.1219 | |
| 2 | I | L | 0.0000 | |
| 3 | M | L | 0.2160 | |
| 4 | M | L | 0.0000 | |
| 5 | T | L | -0.7255 | |
| 6 | Q | L | -0.8204 | |
| 7 | S | L | -0.7279 | |
| 8 | P | L | -0.5628 | |
| 9 | S | L | -0.6699 | |
| 10 | S | L | -0.8203 | |
| 11 | L | L | -0.4341 | |
| 12 | A | L | -0.9051 | |
| 13 | V | L | -1.1439 | |
| 14 | S | L | -1.4575 | |
| 15 | V | L | -1.0891 | |
| 16 | G | L | -1.6773 | |
| 17 | E | L | -2.4866 | |
| 18 | K | L | -2.2202 | |
| 19 | V | L | 0.0000 | |
| 20 | T | L | -0.5650 | |
| 21 | M | L | 0.0000 | |
| 22 | S | L | -0.7830 | |
| 23 | C | L | 0.0000 | |
| 24 | K | L | -1.9367 | |
| 25 | S | L | 0.0000 | |
| 26 | S | L | -1.0514 | |
| 27 | Q | L | -1.5608 | |
| 28 | S | L | -0.8616 | |
| 29 | L | L | 0.0000 | |
| 30 | L | L | -0.3191 | |
| 31 | Y | L | -0.1778 | |
| 32 | S | L | -0.7606 | |
| 33 | S | L | -0.7775 | |
| 34 | N | L | -1.2250 | |
| 35 | Q | L | -1.7791 | |
| 36 | K | L | -1.5495 | |
| 37 | N | L | 0.0000 | |
| 38 | Y | L | 0.0000 | |
| 39 | L | L | 0.0000 | |
| 40 | A | L | 0.0000 | |
| 41 | W | L | 0.0000 | |
| 42 | Y | L | 0.0000 | |
| 43 | Q | L | 0.0000 | |
| 44 | Q | L | -0.9972 | |
| 45 | K | L | -1.5922 | |
| 46 | P | L | -1.0572 | |
| 47 | G | L | -1.5319 | |
| 48 | Q | L | -2.1388 | |
| 49 | S | L | -1.3402 | |
| 50 | P | L | 0.0000 | |
| 51 | K | L | -0.9114 | |
| 52 | L | L | 0.0000 | |
| 53 | L | L | 0.0000 | |
| 54 | I | L | 0.0000 | |
| 55 | Y | L | 0.2169 | |
| 56 | W | L | -0.0304 | |
| 57 | A | L | 0.0000 | |
| 65 | S | L | -0.4197 | |
| 66 | T | L | -0.3365 | |
| 67 | R | L | -1.1464 | |
| 68 | E | L | -0.7731 | |
| 69 | S | L | -0.7307 | |
| 70 | G | L | -0.9614 | |
| 71 | V | L | 0.0000 | |
| 72 | P | L | -1.3500 | |
| 74 | D | L | -2.2223 | |
| 75 | R | L | -1.6263 | |
| 76 | F | L | 0.0000 | |
| 77 | T | L | -0.8045 | |
| 78 | G | L | 0.0000 | |
| 79 | S | L | -0.5531 | |
| 80 | G | L | -1.0158 | |
| 83 | S | L | -1.1159 | |
| 84 | G | L | -1.0485 | |
| 85 | T | L | -1.4737 | |
| 86 | D | L | -2.0558 | |
| 87 | F | L | 0.0000 | |
| 88 | T | L | -0.6906 | |
| 89 | L | L | 0.0000 | |
| 90 | T | L | -0.4757 | |
| 91 | I | L | 0.0000 | |
| 92 | S | L | -1.5040 | |
| 93 | S | L | -1.7997 | |
| 94 | V | L | 0.0000 | |
| 95 | K | L | -2.0631 | |
| 96 | A | L | -1.3618 | |
| 97 | E | L | -1.9154 | |
| 98 | D | L | 0.0000 | |
| 99 | L | L | -0.4312 | |
| 100 | A | L | 0.0000 | |
| 101 | V | L | -0.4348 | |
| 102 | Y | L | 0.0000 | |
| 103 | Y | L | 0.0000 | |
| 104 | C | L | 0.0000 | |
| 105 | Q | L | 0.0000 | |
| 106 | Q | L | 0.0000 | |
| 107 | Y | L | 0.0000 | |
| 108 | Y | L | 0.5551 | |
| 109 | S | L | 0.1206 | |
| 114 | Y | L | 0.4240 | |
| 115 | P | L | -0.3214 | |
| 116 | W | L | 0.0000 | |
| 117 | T | L | 0.0362 | |
| 118 | F | L | 0.0000 | |
| 119 | G | L | 0.0000 | |
| 120 | G | L | -0.8255 | |
| 121 | G | L | 0.0000 | |
| 122 | T | L | 0.0000 | |
| 123 | K | L | -1.0535 | |
| 124 | L | L | 0.0000 | |
| 125 | E | L | -1.3853 | |
| 126 | I | L | -1.2006 | |
| 127 | K | L | -1.9013 |