Project name: Test [mutate: VA126H, TR122H]

Status: done

Started: 2026-01-10 19:54:30
Settings
Chain sequence(s) H: QVQLVESGGGPVEAGGSLRLSCAASGRSFSNSVMAWFRQAPGKEREFLSVLNWSSGRTSIADSVKGRFTMSRDPAKITVYLQMNGLKPEDTAVYYCAASNRGSLYTLDNQNRYEDWGQGTQVTVSS
input PDB
Selected Chain(s) H
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues VA126H,TR122H
Energy difference between WT (input) and mutated protein (by FoldX) 3.63849 kcal/mol

CAUTION: Your mutation/s can destabilize the protein structure

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Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with H chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       FoldX:    Building mutant model                                                       (00:00:26)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:01:21)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:57)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:58)
Show buried residues

Minimal score value
-2.8738
Maximal score value
1.7635
Average score
-0.8278
Total score value
-104.3001

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.7679
2 V H -1.4521
3 Q H -1.3353
4 L H 0.0000
5 V H 0.4719
6 E H 0.0000
7 S H -0.6768
8 G H -1.0700
9 G H -1.0702
11 G H -0.7907
12 P H -0.7473
13 V H -1.0808
14 E H -2.2152
15 A H -1.8387
16 G H -1.4579
17 G H -1.2826
18 S H -1.2357
19 L H -0.9083
20 R H -1.7242
21 L H 0.0000
22 S H -0.4832
23 C H 0.0000
24 A H 0.0069
25 A H 0.0000
26 S H -1.0404
27 G H -1.6385
28 R H -1.7578
29 S H -1.1172
30 F H 0.0000
35 S H -1.0509
36 N H -1.8279
37 S H 0.0000
38 V H 0.0000
39 M H 0.0000
40 A H 0.0000
41 W H 0.0000
42 F H 0.0000
43 R H 0.0000
44 Q H -1.3818
45 A H -1.4537
46 P H -1.0861
47 G H -1.6781
48 K H -2.6504
49 E H -2.8738
50 R H -1.8378
51 E H -1.3762
52 F H -0.7829
53 L H 0.0000
54 S H 0.0000
55 V H 0.0000
56 L H 0.0000
57 N H -1.4171
58 W H 0.0000
59 S H -1.2093
62 S H -1.2647
63 G H -1.5296
64 R H -2.2569
65 T H -1.1270
66 S H -0.9331
67 I H -0.7870
68 A H -1.3385
69 D H -2.4778
70 S H -1.5068
71 V H 0.0000
72 K H -2.6663
74 G H -1.8302
75 R H -1.7122
76 F H 0.0000
77 T H -0.8959
78 M H 0.0000
79 S H -0.6942
80 R H -0.7806
81 D H -0.9996
82 P H -0.7746
83 A H -0.7672
84 K H -1.5424
85 I H -0.3031
86 T H 0.0000
87 V H 0.0000
88 Y H -0.5370
89 L H 0.0000
90 Q H -1.1991
91 M H 0.0000
92 N H -1.4297
93 G H -1.3509
94 L H 0.0000
95 K H -2.1339
96 P H -1.7802
97 E H -2.1862
98 D H 0.0000
99 T H -0.9773
100 A H 0.0000
101 V H -0.4221
102 Y H 0.0000
103 Y H -0.2178
104 C H 0.0000
105 A H 0.0000
106 A H 0.0000
107 S H 0.0000
108 N H -1.7727
109 R H -2.4330
110 G H -1.0475
111 S H -0.0001
111A L H 1.7635
111B Y H 0.8783
111C T H 0.1031
112C L H -0.2108
112B D H -1.2841
112A N H -1.6035
112 Q H -1.5440
113 N H -1.7952
114 R H 0.0000
115 Y H 0.0000
116 E H -1.3675
117 D H -0.7331
118 W H -0.2414
119 G H -0.4435
120 Q H -1.1954
121 G H 0.0000
122 R H -1.2882 mutated: TR122H
123 Q H -1.3289
124 V H 0.0000
125 T H -1.0112
126 A H 0.0000 mutated: VA126H
127 S H -1.3435
128 S H -1.1415
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Laboratory of Theory of Biopolymers 2018