Project name: X2Y2_scTCR

Status: done

Started: 2026-05-11 05:48:40
Settings
Chain sequence(s) A: QKEVEQSSGPLSVPEGASASLNCTYSDRGSQSFFWYRQYPGKGPELLMSLWNSGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVANERNYQLIWGAGTKLIIKPGGGSEGGGSEGGGSEGGGSEGGTGDAGVTQTPRHLIKTRGQQVTLSCSPISGHRSVSWYQQTPGQGLQFLFEFYHGSLRNKGNFPDRFSGRQFSNSRSEMNVSTLELGDSALYLCASSLAGDTQYFGPGTRLTVL
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:25)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:26)
Show buried residues

Minimal score value
-3.8907
Maximal score value
1.743
Average score
-0.912
Total score value
-224.3403

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -2.4665
2 K A -3.2085
3 E A -3.3259
4 V A 0.0000
5 E A -2.4440
6 Q A -1.3967
7 S A -1.1813
8 S A -1.0845
9 G A -1.0639
10 P A -0.8646
11 L A -0.2148
12 S A -0.5775
13 V A -0.7772
14 P A -1.9441
15 E A -2.8256
16 G A -2.4428
17 A A -1.7300
18 S A -1.3843
19 A A 0.0000
20 S A -0.2159
21 L A 0.0000
22 N A -0.8920
23 C A 0.0000
24 T A -1.2413
25 Y A 0.0000
26 S A -2.1135
27 D A 0.0000
28 R A -2.3454
29 G A -1.7053
30 S A 0.0000
31 Q A -0.8781
32 S A 0.0000
33 F A 0.0000
34 F A 0.0000
35 W A 0.0000
36 Y A 0.0000
37 R A -0.7956
38 Q A 0.0000
39 Y A -0.9063
40 P A -0.7766
41 G A -1.6654
42 K A -2.1415
43 G A 0.0000
44 P A 0.0000
45 E A -1.2390
46 L A 0.0507
47 L A -0.1807
48 M A 0.0000
49 S A -0.0174
50 L A 0.0000
51 W A 0.3519
52 N A -0.5676
53 S A -1.2438
54 G A -1.8451
55 D A -3.1966
56 K A -3.3815
57 E A -3.8907
58 D A -3.2371
59 G A -2.1188
60 R A -2.1375
61 F A 0.0000
62 T A 0.0000
63 A A 0.0000
64 Q A -2.2880
65 L A -1.5128
66 N A -1.6719
67 K A -1.6952
68 A A -0.8568
69 S A -0.8555
70 Q A -1.0585
71 Y A -0.6748
72 V A 0.0000
73 S A 0.0000
74 L A 0.0000
75 L A -0.4397
76 I A 0.0000
77 R A -2.0966
78 D A -2.8981
79 S A 0.0000
80 Q A -1.9536
81 P A -1.2814
82 S A -0.5730
83 D A 0.0000
84 S A -0.5704
85 A A 0.0000
86 T A -0.6550
87 Y A 0.0000
88 L A 0.0000
89 C A 0.0000
90 A A 0.0000
91 V A 0.0000
92 A A 0.0000
93 N A 0.0000
94 E A -2.2746
95 R A -2.6842
96 N A -2.1386
97 Y A -0.7917
98 Q A -0.7407
99 L A 0.0000
100 I A -0.6784
101 W A 0.0000
102 G A 0.0000
103 A A -1.3917
104 G A -1.2861
105 T A 0.0000
106 K A -1.6195
107 L A 0.0000
108 I A -0.6009
109 I A 0.0000
110 K A -2.1906
111 P A -1.8460
112 G A -1.7587
113 G A -1.6285
114 G A -1.4298
115 S A -1.6622
116 E A -2.4854
117 G A -1.7933
118 G A -1.4273
119 G A -1.5696
120 S A -1.5557
121 E A -2.3509
122 G A -1.8051
123 G A -1.3587
124 G A -1.4036
125 S A -1.6941
126 E A -2.4527
127 G A -1.8326
128 G A -1.7658
129 G A -1.7197
130 S A -1.7125
131 E A -2.4704
132 G A -1.7647
133 G A -1.6257
134 T A -1.2996
135 G A -1.5786
136 D A -2.2085
137 A A -1.2127
138 G A -0.7888
139 V A 0.0000
140 T A -0.4439
141 Q A 0.0000
142 T A -1.0811
143 P A -1.5479
144 R A -3.0340
145 H A -2.0813
146 L A -0.2900
147 I A 1.7430
148 K A 0.3799
149 T A -0.2995
150 R A -1.7737
151 G A -1.6851
152 Q A -2.1674
153 Q A -2.1721
154 V A 0.0000
155 T A -0.5265
156 L A 0.0000
157 S A -0.6344
158 C A 0.0000
159 S A -0.6069
160 P A -0.5031
161 I A -0.5141
162 S A -1.0913
163 G A -0.7837
164 H A 0.0000
165 R A -2.0435
166 S A -1.0482
167 V A 0.0000
168 S A 0.0000
169 W A 0.0000
170 Y A 0.0000
171 Q A 0.0000
172 Q A -1.1329
173 T A -0.9682
174 P A -0.9042
175 G A -1.4550
176 Q A -1.7671
177 G A -1.2951
178 L A 0.0000
179 Q A -1.5110
180 F A 0.0000
181 L A 0.0000
182 F A 0.0000
183 E A -1.3560
184 F A 0.0000
185 Y A -1.0667
186 H A -1.8327
187 G A -1.6556
188 S A -0.9865
189 L A -1.1278
190 R A -2.2476
191 N A -1.9519
192 K A -2.4138
193 G A -1.7138
194 N A -1.8920
195 F A -1.2045
196 P A -1.2027
197 D A -2.1056
198 R A -1.4154
199 F A 0.0000
200 S A -1.3543
201 G A -1.2223
202 R A -1.8103
203 Q A 0.0000
204 F A -0.9009
205 S A -1.2297
206 N A -1.9322
207 S A -1.8914
208 R A -1.4642
209 S A 0.0000
210 E A 0.0000
211 M A 0.0000
212 N A -1.0221
213 V A 0.0000
214 S A -1.4344
215 T A -1.7163
216 L A 0.0000
217 E A -1.0558
218 L A 0.7330
219 G A -0.0704
220 D A 0.0000
221 S A 0.1035
222 A A 0.0000
223 L A 0.0000
224 Y A 0.0000
225 L A 0.0000
226 C A 0.0000
227 A A 0.0000
228 S A 0.0000
229 S A 0.0000
230 L A 0.9146
231 A A 0.2818
232 G A -0.2593
233 D A -0.2238
234 T A 0.3612
235 Q A 0.3526
236 Y A 0.7761
237 F A 0.0810
238 G A 0.0000
239 P A -1.3030
240 G A 0.0000
241 T A 0.0000
242 R A -2.6263
243 L A 0.0000
244 T A 0.3754
245 V A 0.0000
246 L A 1.5499
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Laboratory of Theory of Biopolymers 2018