Project name: CM403-426 Mod2

Status: done

Started: 2026-02-23 10:13:46
Settings
Chain sequence(s) A: DNAITNLLAGRVSQMRMLPLGVLS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:31)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:31)
Show buried residues

Minimal score value
-1.9652
Maximal score value
2.4183
Average score
0.6448
Total score value
15.4764

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 D A -1.9652
2 N A -1.5262
3 A A -0.0201
4 I A 1.4203
5 T A 0.0590
6 N A -0.3488
7 L A 1.4496
8 L A 1.6447
9 A A 0.7621
10 G A -0.2160
11 R A -0.7987
12 V A 0.9907
13 S A 0.0573
14 Q A -0.4760
15 M A 0.6303
16 R A 0.0054
17 M A 1.0168
18 L A 1.5396
19 P A 1.4792
20 L A 2.3769
21 G A 1.7739
22 V A 2.0849
23 L A 2.4183
24 S A 1.1184
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Laboratory of Theory of Biopolymers 2018