| Chain sequence(s) |
A: QQKFQFQFEQQ
C: QQKFQFQFEQQ B: QQKFQFQFEQQ D: QQKFQFQFEQQ input PDB |
| Selected Chain(s) | A,C,B,D |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:02:44)
[INFO] Main: Simulation completed successfully. (00:02:45)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | A | -3.4549 | |
| 2 | Q | A | -2.6416 | |
| 3 | K | A | -1.7497 | |
| 4 | F | A | 0.8249 | |
| 5 | Q | A | 0.3745 | |
| 6 | F | A | 1.4793 | |
| 7 | Q | A | 0.1662 | |
| 8 | F | A | 0.3172 | |
| 9 | E | A | -2.0781 | |
| 10 | Q | A | -2.6893 | |
| 11 | Q | A | -3.2525 | |
| 1 | Q | B | -3.4999 | |
| 2 | Q | B | -2.8350 | |
| 3 | K | B | -2.1923 | |
| 4 | F | B | 0.2831 | |
| 5 | Q | B | 0.0715 | |
| 6 | F | B | 1.5977 | |
| 7 | Q | B | 0.4280 | |
| 8 | F | B | 0.6518 | |
| 9 | E | B | -1.8592 | |
| 10 | Q | B | -2.6063 | |
| 11 | Q | B | -3.2606 | |
| 1 | Q | C | -2.8242 | |
| 2 | Q | C | -2.7323 | |
| 3 | K | C | -1.8756 | |
| 4 | F | C | 1.1026 | |
| 5 | Q | C | 0.5608 | |
| 6 | F | C | 1.8755 | |
| 7 | Q | C | 0.0801 | |
| 8 | F | C | 0.1949 | |
| 9 | E | C | -2.5929 | |
| 10 | Q | C | -2.9096 | |
| 11 | Q | C | -2.9308 | |
| 1 | Q | D | -2.7899 | |
| 2 | Q | D | -2.6258 | |
| 3 | K | D | -1.7353 | |
| 4 | F | D | 0.9945 | |
| 5 | Q | D | 0.1704 | |
| 6 | F | D | 1.8684 | |
| 7 | Q | D | 0.2175 | |
| 8 | F | D | 0.9667 | |
| 9 | E | D | -1.8801 | |
| 10 | Q | D | -2.5678 | |
| 11 | Q | D | -2.8602 |