Project name: 5GGQ

Status: done

Started: 2026-03-29 08:21:58
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Chain sequence(s) H: QVQLVESGGGVVQPGRSLRLDCKASGITFSNSGMHWVRQAPGKGLEWVAVIWYDGSKRYYADSVKGRFTISRDNSKNTLFLQMNSLRAEDTAVYYCATNDDYWGQGTLVTVSS
L: EIVLTQSPATLSLSPGERATLSCRASQSVSSYLAWYQQKPGQAPRLLIYDASNRATGIPARFSGSGSGTDFTLTISSLEPEDFAVYYCQQSSNWPRTFGQGTKVEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:59)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:00)
Show buried residues

Minimal score value
-2.5728
Maximal score value
1.7662
Average score
-0.6035
Total score value
-132.7805

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.2708
2 V H -0.3932
3 Q H -0.6631
4 L H 0.0000
5 V H 0.2732
6 E H 0.0000
7 S H -0.5411
8 G H -0.6941
9 G H 0.2159
11 G H 0.9397
12 V H 1.7662
13 V H -0.0096
14 Q H -1.1581
15 P H -1.7589
16 G H -2.0259
17 R H -2.5728
18 S H -1.8193
19 L H -1.0226
20 R H -1.6695
21 L H 0.0000
22 D H -0.9593
23 C H 0.0000
24 K H -1.5358
25 A H 0.0000
26 S H -0.8902
27 G H -0.7445
28 I H -0.2110
29 T H -0.3374
30 F H 0.0000
35 S H -1.2138
36 N H -1.2321
37 S H -1.0183
38 G H -0.8908
39 M H 0.0000
40 H H 0.0000
41 W H 0.0000
42 V H 0.0000
43 R H 0.0000
44 Q H -0.6191
45 A H -1.0030
46 P H -0.8000
47 G H -1.4842
48 K H -2.3760
49 G H -1.5691
50 L H 0.0000
51 E H -1.0217
52 W H 0.0000
53 V H 0.0000
54 A H 0.0000
55 V H 0.0000
56 I H 0.0000
57 W H -0.6269
58 Y H -0.4621
59 D H -1.8099
62 G H -1.2027
63 S H -1.1810
64 K H -1.4253
65 R H -1.0074
66 Y H -0.2627
67 Y H -0.6111
68 A H -1.2942
69 D H -2.4620
70 S H -1.6293
71 V H 0.0000
72 K H -2.1345
74 G H -1.5271
75 R H -1.3251
76 F H 0.0000
77 T H -0.7534
78 I H 0.0000
79 S H -0.4308
80 R H -1.0659
81 D H -1.7931
82 N H -1.8515
83 S H -1.5377
84 K H -2.5577
85 N H -2.0035
86 T H 0.0000
87 L H 0.0000
88 F H -0.6050
89 L H 0.0000
90 Q H -1.0892
91 M H 0.0000
92 N H -1.6849
93 S H -1.6245
94 L H 0.0000
95 R H -2.2821
96 A H -1.5528
97 E H -2.1876
98 D H 0.0000
99 T H -0.2948
100 A H 0.0000
101 V H 0.8464
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 A H 0.0000
106 T H 0.0000
107 N H -1.4991
115 D H -1.8091
116 D H -0.8244
117 Y H 0.1954
118 W H -0.0519
119 G H 0.0000
120 Q H -1.0800
121 G H -0.1071
122 T H 0.0000
123 L H 1.7493
124 V H 0.0000
125 T H 0.5511
126 V H 0.0000
127 S H -0.4297
128 S H -0.3288
1 E L -1.8877
2 I L 0.0000
3 V L 0.6118
4 L L 0.0000
5 T L -0.7149
6 Q L 0.0000
7 S L -0.7837
8 P L -0.3540
9 A L -0.4439
10 T L -0.4228
11 L L -0.1202
12 S L -0.2606
13 L L -0.5041
14 S L -0.8227
15 P L -1.1821
16 G L -1.5628
17 E L -1.9598
18 R L -2.4655
19 A L 0.0000
20 T L -0.6528
21 L L 0.0000
22 S L -0.8660
23 C L 0.0000
24 R L -2.3185
25 A L 0.0000
26 S L -1.0431
27 Q L -1.7310
28 S L -1.1906
29 V L 0.0000
36 S L -0.3629
37 S L -0.1083
38 Y L 0.7268
39 L L 0.0000
40 A L 0.0763
41 W L 0.0000
42 Y L 0.0000
43 Q L 0.0000
44 Q L 0.0000
45 K L -0.8813
46 P L -0.7770
47 G L -1.0577
48 Q L -1.2137
49 A L -0.7180
50 P L 0.0000
51 R L -0.4041
52 L L -0.1345
53 L L 0.0000
54 I L 0.0000
55 Y L -0.3079
56 D L -0.8193
57 A L 0.0000
65 S L -1.0736
66 N L -1.6024
67 R L -1.4082
68 A L -0.9292
69 T L -0.5222
70 G L -0.5382
71 I L -0.3418
72 P L -0.2822
74 A L -0.2716
75 R L -0.5792
76 F L 0.0000
77 S L -0.6401
78 G L -0.7415
79 S L -0.8668
80 G L -1.1314
83 S L -0.9228
84 G L -0.9885
85 T L -1.7196
86 D L -2.0816
87 F L 0.0000
88 T L -0.7549
89 L L 0.0000
90 T L -0.5992
91 I L 0.0000
92 S L -1.2077
93 S L -1.5594
94 L L 0.0000
95 E L -1.7861
96 P L -0.9340
97 E L -1.4149
98 D L 0.0000
99 F L -0.0845
100 A L 0.0000
101 V L -0.1910
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 Q L 0.0000
106 Q L 0.0000
107 S L -0.1990
108 S L -0.2394
109 N L -1.1308
114 W L -0.4517
115 P L -0.7814
116 R L -0.4612
117 T L -0.3322
118 F L -0.0091
119 G L 0.0000
120 Q L -1.3059
121 G L 0.0000
122 T L 0.0000
123 K L -0.7314
124 V L 0.0000
125 E L 0.0005
126 I L 0.8962
127 K L -0.8319
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Laboratory of Theory of Biopolymers 2018