| Chain sequence(s) |
H: QVQLVESGGGVVQPGRSLRLDCKASGITFSNSGMHWVRQAPGKGLEWVAVIWYDGSKRYYADSVKGRFTISRDNSKNTLFLQMNSLRAEDTAVYYCATNDDYWGQGTLVTVSS
L: EIVLTQSPATLSLSPGERATLSCRASQSVSSYLAWYQQKPGQAPRLLIYDASNRATGIPARFSGSGSGTDFTLTISSLEPEDFAVYYCQQSSNWPRTFGQGTKVEIK input PDB |
| Selected Chain(s) | H,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:59)
[INFO] Main: Simulation completed successfully. (00:01:00)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | H | -1.2708 | |
| 2 | V | H | -0.3932 | |
| 3 | Q | H | -0.6631 | |
| 4 | L | H | 0.0000 | |
| 5 | V | H | 0.2732 | |
| 6 | E | H | 0.0000 | |
| 7 | S | H | -0.5411 | |
| 8 | G | H | -0.6941 | |
| 9 | G | H | 0.2159 | |
| 11 | G | H | 0.9397 | |
| 12 | V | H | 1.7662 | |
| 13 | V | H | -0.0096 | |
| 14 | Q | H | -1.1581 | |
| 15 | P | H | -1.7589 | |
| 16 | G | H | -2.0259 | |
| 17 | R | H | -2.5728 | |
| 18 | S | H | -1.8193 | |
| 19 | L | H | -1.0226 | |
| 20 | R | H | -1.6695 | |
| 21 | L | H | 0.0000 | |
| 22 | D | H | -0.9593 | |
| 23 | C | H | 0.0000 | |
| 24 | K | H | -1.5358 | |
| 25 | A | H | 0.0000 | |
| 26 | S | H | -0.8902 | |
| 27 | G | H | -0.7445 | |
| 28 | I | H | -0.2110 | |
| 29 | T | H | -0.3374 | |
| 30 | F | H | 0.0000 | |
| 35 | S | H | -1.2138 | |
| 36 | N | H | -1.2321 | |
| 37 | S | H | -1.0183 | |
| 38 | G | H | -0.8908 | |
| 39 | M | H | 0.0000 | |
| 40 | H | H | 0.0000 | |
| 41 | W | H | 0.0000 | |
| 42 | V | H | 0.0000 | |
| 43 | R | H | 0.0000 | |
| 44 | Q | H | -0.6191 | |
| 45 | A | H | -1.0030 | |
| 46 | P | H | -0.8000 | |
| 47 | G | H | -1.4842 | |
| 48 | K | H | -2.3760 | |
| 49 | G | H | -1.5691 | |
| 50 | L | H | 0.0000 | |
| 51 | E | H | -1.0217 | |
| 52 | W | H | 0.0000 | |
| 53 | V | H | 0.0000 | |
| 54 | A | H | 0.0000 | |
| 55 | V | H | 0.0000 | |
| 56 | I | H | 0.0000 | |
| 57 | W | H | -0.6269 | |
| 58 | Y | H | -0.4621 | |
| 59 | D | H | -1.8099 | |
| 62 | G | H | -1.2027 | |
| 63 | S | H | -1.1810 | |
| 64 | K | H | -1.4253 | |
| 65 | R | H | -1.0074 | |
| 66 | Y | H | -0.2627 | |
| 67 | Y | H | -0.6111 | |
| 68 | A | H | -1.2942 | |
| 69 | D | H | -2.4620 | |
| 70 | S | H | -1.6293 | |
| 71 | V | H | 0.0000 | |
| 72 | K | H | -2.1345 | |
| 74 | G | H | -1.5271 | |
| 75 | R | H | -1.3251 | |
| 76 | F | H | 0.0000 | |
| 77 | T | H | -0.7534 | |
| 78 | I | H | 0.0000 | |
| 79 | S | H | -0.4308 | |
| 80 | R | H | -1.0659 | |
| 81 | D | H | -1.7931 | |
| 82 | N | H | -1.8515 | |
| 83 | S | H | -1.5377 | |
| 84 | K | H | -2.5577 | |
| 85 | N | H | -2.0035 | |
| 86 | T | H | 0.0000 | |
| 87 | L | H | 0.0000 | |
| 88 | F | H | -0.6050 | |
| 89 | L | H | 0.0000 | |
| 90 | Q | H | -1.0892 | |
| 91 | M | H | 0.0000 | |
| 92 | N | H | -1.6849 | |
| 93 | S | H | -1.6245 | |
| 94 | L | H | 0.0000 | |
| 95 | R | H | -2.2821 | |
| 96 | A | H | -1.5528 | |
| 97 | E | H | -2.1876 | |
| 98 | D | H | 0.0000 | |
| 99 | T | H | -0.2948 | |
| 100 | A | H | 0.0000 | |
| 101 | V | H | 0.8464 | |
| 102 | Y | H | 0.0000 | |
| 103 | Y | H | 0.0000 | |
| 104 | C | H | 0.0000 | |
| 105 | A | H | 0.0000 | |
| 106 | T | H | 0.0000 | |
| 107 | N | H | -1.4991 | |
| 115 | D | H | -1.8091 | |
| 116 | D | H | -0.8244 | |
| 117 | Y | H | 0.1954 | |
| 118 | W | H | -0.0519 | |
| 119 | G | H | 0.0000 | |
| 120 | Q | H | -1.0800 | |
| 121 | G | H | -0.1071 | |
| 122 | T | H | 0.0000 | |
| 123 | L | H | 1.7493 | |
| 124 | V | H | 0.0000 | |
| 125 | T | H | 0.5511 | |
| 126 | V | H | 0.0000 | |
| 127 | S | H | -0.4297 | |
| 128 | S | H | -0.3288 | |
| 1 | E | L | -1.8877 | |
| 2 | I | L | 0.0000 | |
| 3 | V | L | 0.6118 | |
| 4 | L | L | 0.0000 | |
| 5 | T | L | -0.7149 | |
| 6 | Q | L | 0.0000 | |
| 7 | S | L | -0.7837 | |
| 8 | P | L | -0.3540 | |
| 9 | A | L | -0.4439 | |
| 10 | T | L | -0.4228 | |
| 11 | L | L | -0.1202 | |
| 12 | S | L | -0.2606 | |
| 13 | L | L | -0.5041 | |
| 14 | S | L | -0.8227 | |
| 15 | P | L | -1.1821 | |
| 16 | G | L | -1.5628 | |
| 17 | E | L | -1.9598 | |
| 18 | R | L | -2.4655 | |
| 19 | A | L | 0.0000 | |
| 20 | T | L | -0.6528 | |
| 21 | L | L | 0.0000 | |
| 22 | S | L | -0.8660 | |
| 23 | C | L | 0.0000 | |
| 24 | R | L | -2.3185 | |
| 25 | A | L | 0.0000 | |
| 26 | S | L | -1.0431 | |
| 27 | Q | L | -1.7310 | |
| 28 | S | L | -1.1906 | |
| 29 | V | L | 0.0000 | |
| 36 | S | L | -0.3629 | |
| 37 | S | L | -0.1083 | |
| 38 | Y | L | 0.7268 | |
| 39 | L | L | 0.0000 | |
| 40 | A | L | 0.0763 | |
| 41 | W | L | 0.0000 | |
| 42 | Y | L | 0.0000 | |
| 43 | Q | L | 0.0000 | |
| 44 | Q | L | 0.0000 | |
| 45 | K | L | -0.8813 | |
| 46 | P | L | -0.7770 | |
| 47 | G | L | -1.0577 | |
| 48 | Q | L | -1.2137 | |
| 49 | A | L | -0.7180 | |
| 50 | P | L | 0.0000 | |
| 51 | R | L | -0.4041 | |
| 52 | L | L | -0.1345 | |
| 53 | L | L | 0.0000 | |
| 54 | I | L | 0.0000 | |
| 55 | Y | L | -0.3079 | |
| 56 | D | L | -0.8193 | |
| 57 | A | L | 0.0000 | |
| 65 | S | L | -1.0736 | |
| 66 | N | L | -1.6024 | |
| 67 | R | L | -1.4082 | |
| 68 | A | L | -0.9292 | |
| 69 | T | L | -0.5222 | |
| 70 | G | L | -0.5382 | |
| 71 | I | L | -0.3418 | |
| 72 | P | L | -0.2822 | |
| 74 | A | L | -0.2716 | |
| 75 | R | L | -0.5792 | |
| 76 | F | L | 0.0000 | |
| 77 | S | L | -0.6401 | |
| 78 | G | L | -0.7415 | |
| 79 | S | L | -0.8668 | |
| 80 | G | L | -1.1314 | |
| 83 | S | L | -0.9228 | |
| 84 | G | L | -0.9885 | |
| 85 | T | L | -1.7196 | |
| 86 | D | L | -2.0816 | |
| 87 | F | L | 0.0000 | |
| 88 | T | L | -0.7549 | |
| 89 | L | L | 0.0000 | |
| 90 | T | L | -0.5992 | |
| 91 | I | L | 0.0000 | |
| 92 | S | L | -1.2077 | |
| 93 | S | L | -1.5594 | |
| 94 | L | L | 0.0000 | |
| 95 | E | L | -1.7861 | |
| 96 | P | L | -0.9340 | |
| 97 | E | L | -1.4149 | |
| 98 | D | L | 0.0000 | |
| 99 | F | L | -0.0845 | |
| 100 | A | L | 0.0000 | |
| 101 | V | L | -0.1910 | |
| 102 | Y | L | 0.0000 | |
| 103 | Y | L | 0.0000 | |
| 104 | C | L | 0.0000 | |
| 105 | Q | L | 0.0000 | |
| 106 | Q | L | 0.0000 | |
| 107 | S | L | -0.1990 | |
| 108 | S | L | -0.2394 | |
| 109 | N | L | -1.1308 | |
| 114 | W | L | -0.4517 | |
| 115 | P | L | -0.7814 | |
| 116 | R | L | -0.4612 | |
| 117 | T | L | -0.3322 | |
| 118 | F | L | -0.0091 | |
| 119 | G | L | 0.0000 | |
| 120 | Q | L | -1.3059 | |
| 121 | G | L | 0.0000 | |
| 122 | T | L | 0.0000 | |
| 123 | K | L | -0.7314 | |
| 124 | V | L | 0.0000 | |
| 125 | E | L | 0.0005 | |
| 126 | I | L | 0.8962 | |
| 127 | K | L | -0.8319 |