| Chain sequence(s) |
A: QVQLVESGGGSVQAGGSLRLSCAASGKIYWITYLGWFRQAPGKEREGVAALNTKQGKTYYADSVKGRFTVSLDNAKNTVYLQMNSLKPEDTALYYCAAAYKVGNISPLWALHYGYWGQGTQVTV
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:37)
[INFO] Main: Simulation completed successfully. (00:01:37)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | A | -1.3858 | |
| 2 | V | A | -0.9900 | |
| 3 | Q | A | -1.1959 | |
| 4 | L | A | 0.0000 | |
| 5 | V | A | 0.4826 | |
| 6 | E | A | 0.0000 | |
| 7 | S | A | -0.7376 | |
| 8 | G | A | -1.2626 | |
| 9 | G | A | -1.2165 | |
| 10 | G | A | -0.8789 | |
| 11 | S | A | -0.5612 | |
| 12 | V | A | -0.5382 | |
| 13 | Q | A | -1.3398 | |
| 14 | A | A | -1.4327 | |
| 15 | G | A | -1.3189 | |
| 16 | G | A | -1.0491 | |
| 17 | S | A | -1.3840 | |
| 18 | L | A | -1.2689 | |
| 19 | R | A | -2.3706 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.4966 | |
| 22 | C | A | 0.0000 | |
| 23 | A | A | -0.3448 | |
| 24 | A | A | 0.0000 | |
| 25 | S | A | -1.0715 | |
| 26 | G | A | -0.8949 | |
| 27 | K | A | -0.7243 | |
| 28 | I | A | 0.0000 | |
| 29 | Y | A | 1.0108 | |
| 30 | W | A | 1.0199 | |
| 31 | I | A | 0.0000 | |
| 32 | T | A | 0.0000 | |
| 33 | Y | A | 0.0000 | |
| 34 | L | A | 0.0000 | |
| 35 | G | A | 0.0000 | |
| 36 | W | A | 0.0000 | |
| 37 | F | A | 0.0000 | |
| 38 | R | A | -1.5391 | |
| 39 | Q | A | -2.3641 | |
| 40 | A | A | -2.1454 | |
| 41 | P | A | -1.5038 | |
| 42 | G | A | -2.0283 | |
| 43 | K | A | -3.4770 | |
| 44 | E | A | -3.8210 | |
| 45 | R | A | -3.2941 | |
| 46 | E | A | -2.0615 | |
| 47 | G | A | 0.0000 | |
| 48 | V | A | 0.0000 | |
| 49 | A | A | 0.0000 | |
| 50 | A | A | 0.0000 | |
| 51 | L | A | 0.0000 | |
| 52 | N | A | -1.5432 | |
| 53 | T | A | -1.3134 | |
| 54 | K | A | -2.3316 | |
| 55 | Q | A | -2.7144 | |
| 56 | G | A | -2.1755 | |
| 57 | K | A | -2.2001 | |
| 58 | T | A | -0.7930 | |
| 59 | Y | A | -0.3353 | |
| 60 | Y | A | -0.7223 | |
| 61 | A | A | 0.0000 | |
| 62 | D | A | -2.4033 | |
| 63 | S | A | -1.7865 | |
| 64 | V | A | 0.0000 | |
| 65 | K | A | -2.5797 | |
| 66 | G | A | -1.8708 | |
| 67 | R | A | -1.7550 | |
| 68 | F | A | 0.0000 | |
| 69 | T | A | -1.0452 | |
| 70 | V | A | 0.0000 | |
| 71 | S | A | -0.4738 | |
| 72 | L | A | -0.5060 | |
| 73 | D | A | -1.4262 | |
| 74 | N | A | -1.7514 | |
| 75 | A | A | -1.4630 | |
| 76 | K | A | -2.2238 | |
| 77 | N | A | -1.5841 | |
| 78 | T | A | 0.0000 | |
| 79 | V | A | 0.0000 | |
| 80 | Y | A | 0.0000 | |
| 81 | L | A | 0.0000 | |
| 82 | Q | A | -1.6999 | |
| 83 | M | A | 0.0000 | |
| 84 | N | A | -2.0324 | |
| 85 | S | A | -1.4312 | |
| 86 | L | A | 0.0000 | |
| 87 | K | A | -2.2801 | |
| 88 | P | A | -1.7565 | |
| 89 | E | A | -2.2820 | |
| 90 | D | A | 0.0000 | |
| 91 | T | A | -1.0628 | |
| 92 | A | A | 0.0000 | |
| 93 | L | A | -0.7237 | |
| 94 | Y | A | 0.0000 | |
| 95 | Y | A | -0.4137 | |
| 96 | C | A | 0.0000 | |
| 97 | A | A | 0.0000 | |
| 98 | A | A | 0.0000 | |
| 99 | A | A | 0.0000 | |
| 100 | Y | A | -0.1550 | |
| 101 | K | A | -1.5902 | |
| 102 | V | A | -0.9998 | |
| 103 | G | A | -1.0725 | |
| 104 | N | A | -1.2272 | |
| 105 | I | A | 0.1214 | |
| 106 | S | A | -0.0869 | |
| 107 | P | A | -0.0028 | |
| 108 | L | A | 0.2099 | |
| 109 | W | A | 0.3046 | |
| 110 | A | A | 0.0948 | |
| 111 | L | A | 0.0000 | |
| 112 | H | A | -0.9646 | |
| 113 | Y | A | 0.0000 | |
| 114 | G | A | -0.3327 | |
| 115 | Y | A | 0.0123 | |
| 116 | W | A | 0.2208 | |
| 117 | G | A | -0.2113 | |
| 118 | Q | A | -1.0044 | |
| 119 | G | A | -0.6708 | |
| 120 | T | A | 0.0000 | |
| 121 | Q | A | -1.3271 | |
| 122 | V | A | 0.0000 | |
| 123 | T | A | -0.7685 | |
| 124 | V | A | -0.8674 |