Project name: query_structure

Status: done

Started: 2026-03-17 00:55:19
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Chain sequence(s) A: QVQLVESGGGSVQAGGSLRLSCAASGKIYWITYLGWFRQAPGKEREGVAALNTKQGKTYYADSVKGRFTVSLDNAKNTVYLQMNSLKPEDTALYYCAAAYKVGNISPLWALHYGYWGQGTQVTV
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:37)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:37)
Show buried residues

Minimal score value
-3.821
Maximal score value
1.0199
Average score
-0.816
Total score value
-101.1811

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.3858
2 V A -0.9900
3 Q A -1.1959
4 L A 0.0000
5 V A 0.4826
6 E A 0.0000
7 S A -0.7376
8 G A -1.2626
9 G A -1.2165
10 G A -0.8789
11 S A -0.5612
12 V A -0.5382
13 Q A -1.3398
14 A A -1.4327
15 G A -1.3189
16 G A -1.0491
17 S A -1.3840
18 L A -1.2689
19 R A -2.3706
20 L A 0.0000
21 S A -0.4966
22 C A 0.0000
23 A A -0.3448
24 A A 0.0000
25 S A -1.0715
26 G A -0.8949
27 K A -0.7243
28 I A 0.0000
29 Y A 1.0108
30 W A 1.0199
31 I A 0.0000
32 T A 0.0000
33 Y A 0.0000
34 L A 0.0000
35 G A 0.0000
36 W A 0.0000
37 F A 0.0000
38 R A -1.5391
39 Q A -2.3641
40 A A -2.1454
41 P A -1.5038
42 G A -2.0283
43 K A -3.4770
44 E A -3.8210
45 R A -3.2941
46 E A -2.0615
47 G A 0.0000
48 V A 0.0000
49 A A 0.0000
50 A A 0.0000
51 L A 0.0000
52 N A -1.5432
53 T A -1.3134
54 K A -2.3316
55 Q A -2.7144
56 G A -2.1755
57 K A -2.2001
58 T A -0.7930
59 Y A -0.3353
60 Y A -0.7223
61 A A 0.0000
62 D A -2.4033
63 S A -1.7865
64 V A 0.0000
65 K A -2.5797
66 G A -1.8708
67 R A -1.7550
68 F A 0.0000
69 T A -1.0452
70 V A 0.0000
71 S A -0.4738
72 L A -0.5060
73 D A -1.4262
74 N A -1.7514
75 A A -1.4630
76 K A -2.2238
77 N A -1.5841
78 T A 0.0000
79 V A 0.0000
80 Y A 0.0000
81 L A 0.0000
82 Q A -1.6999
83 M A 0.0000
84 N A -2.0324
85 S A -1.4312
86 L A 0.0000
87 K A -2.2801
88 P A -1.7565
89 E A -2.2820
90 D A 0.0000
91 T A -1.0628
92 A A 0.0000
93 L A -0.7237
94 Y A 0.0000
95 Y A -0.4137
96 C A 0.0000
97 A A 0.0000
98 A A 0.0000
99 A A 0.0000
100 Y A -0.1550
101 K A -1.5902
102 V A -0.9998
103 G A -1.0725
104 N A -1.2272
105 I A 0.1214
106 S A -0.0869
107 P A -0.0028
108 L A 0.2099
109 W A 0.3046
110 A A 0.0948
111 L A 0.0000
112 H A -0.9646
113 Y A 0.0000
114 G A -0.3327
115 Y A 0.0123
116 W A 0.2208
117 G A -0.2113
118 Q A -1.0044
119 G A -0.6708
120 T A 0.0000
121 Q A -1.3271
122 V A 0.0000
123 T A -0.7685
124 V A -0.8674
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Laboratory of Theory of Biopolymers 2018