Project name: 8acd0a5a7306d19

Status: done

Started: 2025-06-03 05:00:53
Settings
Chain sequence(s) H: QVTLKESGPTLVKPTETLTLTCTLSGFSLNNARMGVSWIRQPPGKCLEWLAHIFSNDEKSYSTSLKNRLTISKDSSKTQVVLTMTNVDPVDTATYYCARIVGYGSGWYGFFDYWGQGTLVTVSS
L: DIQMTQSPSSLSASVGDRVTITCRASQGIRNDLGWYQQKPGKAPKRLIYAASTLQSGVPSRFSGSGSGTEFTLTISSLQPEDFATYYCLQHNSYPLTFGCGTKVEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:52)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:54)
Show buried residues

Minimal score value
-2.8475
Maximal score value
1.2113
Average score
-0.6003
Total score value
-138.6778

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.2453
2 V H -0.4115
3 T H -0.6990
4 L H 0.0000
5 K H -1.8565
6 E H 0.0000
7 S H -0.6493
8 G H -0.3382
9 P H -0.0423
11 T H 0.3544
12 L H 0.5215
13 V H 0.0000
14 K H -1.7657
15 P H -1.4938
16 T H -1.7996
17 E H -1.9633
18 T H -1.2688
19 L H 0.0000
20 T H -0.1926
21 L H 0.0000
22 T H -0.3233
23 C H 0.0000
24 T H -0.9705
25 L H 0.0000
26 S H -0.7568
27 G H -0.7800
28 F H -0.6196
29 S H -1.1532
30 L H 0.0000
31 N H -2.5289
34 N H -2.4162
35 A H -1.9648
36 R H -2.2670
37 M H -1.4031
38 G H 0.0000
39 V H 0.0000
40 S H 0.0000
41 W H 0.0000
42 I H 0.0000
43 R H 0.0000
44 Q H -0.6759
45 P H -0.4751
46 P H -0.7400
47 G H -1.3605
48 K H -1.7991
49 C H -0.5132
50 L H 0.0000
51 E H -0.6035
52 W H 0.0000
53 L H 0.0000
54 A H 0.0000
55 H H 0.0000
56 I H 0.0000
57 F H 0.0000
58 S H -2.4591
59 N H -2.8475
63 D H -2.7016
64 E H -2.3694
65 K H -1.8602
66 S H -0.8257
67 Y H -0.7163
68 S H 0.0000
69 T H -1.0058
70 S H -1.1172
71 L H 0.0000
72 K H -2.4454
74 N H -2.2764
75 R H -1.7590
76 L H 0.0000
77 T H -0.6749
78 I H 0.0000
79 S H -0.7151
80 K H -1.0840
81 D H -1.5278
82 S H -1.6151
83 S H -1.5056
84 K H -2.1574
85 T H -1.5205
86 Q H -1.2783
87 V H 0.0000
88 V H 0.1921
89 L H 0.0000
90 T H -0.0118
91 M H 0.0000
92 T H -1.3746
93 N H -2.1585
94 V H 0.0000
95 D H -1.3949
96 P H -0.2139
97 V H 1.2113
98 D H 0.0000
99 T H 0.4234
100 A H 0.0000
101 T H 0.0489
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 A H 0.0000
106 R H 0.1140
107 I H 0.0000
108 V H 0.0235
109 G H 0.0000
110 Y H 0.1227
111 G H -0.5019
111A S H -0.3015
112B G H -0.2575
112A W H 0.2977
112 Y H 0.5449
113 G H 0.0000
114 F H 0.0000
115 F H 0.0000
116 D H -0.0828
117 Y H 0.5042
118 W H -0.4782
119 G H -1.1219
120 Q H -1.9502
121 G H -1.1024
122 T H -0.2926
123 L H 0.5743
124 V H 0.0000
125 T H 0.2363
126 V H 0.0000
127 S H -0.7896
128 S H -0.6019
1 D L -2.0817
2 I L 0.0000
3 Q L -1.9276
4 M L 0.0000
5 T L -0.6643
6 Q L 0.0000
7 S L -0.3618
8 P L -0.3474
9 S L -0.4366
10 S L -0.7728
11 L L -0.6140
12 S L -0.9631
13 A L 0.0000
14 S L -0.8273
15 V L 0.1292
16 G L -0.8247
17 D L -1.8873
18 R L -2.3626
19 V L 0.0000
20 T L -0.6485
21 I L 0.0000
22 T L -0.5093
23 C L 0.0000
24 R L -1.6976
25 A L 0.0000
26 S L -1.7105
27 Q L -2.1147
28 G L -1.8856
29 I L 0.0000
36 R L -2.4570
37 N L -1.6209
38 D L 0.0000
39 L L 0.0000
40 G L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L 0.0000
44 Q L -1.1267
45 K L -1.4680
46 P L -1.0842
47 G L -1.6694
48 K L -2.5680
49 A L -1.5853
50 P L 0.0000
51 K L -1.2529
52 R L 0.0000
53 L L 0.0000
54 I L 0.0000
55 Y L 0.1339
56 A L -0.2515
57 A L 0.0000
65 S L -0.3006
66 T L 0.0665
67 L L 0.2304
68 Q L -0.3435
69 S L -0.4360
70 G L -0.5956
71 V L 0.0000
72 P L -0.4381
74 S L -0.4978
75 R L -0.8601
76 F L 0.0000
77 S L -0.3552
78 G L -0.2467
79 S L -0.6552
80 G L -1.1484
83 S L -1.5593
84 G L -1.8402
85 T L -1.7447
86 E L -1.6364
87 F L 0.0000
88 T L -0.5510
89 L L 0.0000
90 T L -0.6438
91 I L 0.0000
92 S L -1.4585
93 S L -1.2445
94 L L 0.0000
95 Q L -0.6301
96 P L -0.8874
97 E L -1.5534
98 D L 0.0000
99 F L -0.0814
100 A L 0.0000
101 T L -0.4531
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 L L 0.0000
106 Q L 0.0000
107 H L 0.0000
108 N L -0.4790
109 S L 0.0446
114 Y L 0.4434
115 P L 0.0000
116 L L 0.0000
117 T L -0.4629
118 F L 0.0000
119 G L 0.0000
120 C L 0.2250
121 G L 0.0000
122 T L 0.0000
123 K L -1.0915
124 V L 0.0000
125 E L -0.9786
126 I L -0.5284
127 K L -1.5242
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Laboratory of Theory of Biopolymers 2018