Project name: RADA16-I_2

Status: done

Started: 2026-06-25 06:22:09
Settings
Chain sequence(s) A: RADARADARADARADA
B: RADARADARADARADA
input PDB
Selected Chain(s) A,B
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:41)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:41)
Show buried residues

Minimal score value
-4.0305
Maximal score value
0.0
Average score
-2.4371
Total score value
-77.9882

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 R A -3.1498
2 A A -2.4834
3 D A -3.1541
4 A A 0.0000
5 R A -3.7622
6 A A -2.8064
7 D A -3.4826
8 A A 0.0000
9 R A -3.6130
10 A A -2.8156
11 D A -3.5667
12 A A 0.0000
13 R A -3.1678
14 A A -2.2917
15 D A -2.6951
16 A A -1.7073
1 R B -3.1918
2 A B -2.5644
3 D B -3.2299
4 A B 0.0000
5 R B -4.0305
6 A B -2.9622
7 D B -3.5535
8 A B 0.0000
9 R B -3.7192
10 A B -2.8576
11 D B -3.5090
12 A B 0.0000
13 R B -3.0897
14 A B -2.2465
15 D B -2.6528
16 A B -1.6854
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018