Project name: 4A1

Status: done

Started: 2024-12-28 01:24:31
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Chain sequence(s) A: ARLEQTPTTTTKEAGESTINCVLRDSSCALASTNWHFTKKGATKKESLNGGRYAETNKASKSFSLRISDLVEDSGTYHCKALAFGCQFQGYYEGGGTILTVK
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:58)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:58)
Show buried residues

Minimal score value
-3.5481
Maximal score value
1.0879
Average score
-1.0311
Total score value
-105.1682

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 A A -1.9133
2 R A -3.1740
3 L A 0.0000
4 E A -2.7035
5 Q A 0.0000
6 T A -0.4712
7 P A -0.2338
8 T A -0.0566
9 T A 0.4013
10 T A 0.1429
11 T A -0.7953
12 K A -1.8852
13 E A -2.6332
14 A A -1.7539
15 G A -1.7379
16 E A -2.6024
17 S A 0.0000
18 T A -1.1555
19 I A 0.0000
20 N A -1.1881
21 C A 0.0000
22 V A -1.3768
23 L A 0.0000
24 R A -2.8911
25 D A -2.7295
26 S A -1.6449
27 S A -0.6650
28 C A 0.0000
29 A A 0.1395
30 L A 0.4189
31 A A 0.4323
32 S A 0.0699
33 T A -0.8104
34 N A -1.6043
35 W A 0.0000
36 H A -2.1782
37 F A 0.0000
38 T A -2.3923
39 K A -2.8050
40 K A -2.3988
41 G A -1.7409
42 A A -1.8349
43 T A -1.9861
44 K A -3.1961
45 K A -3.5481
46 E A -3.3633
47 S A -2.1457
48 L A 0.0000
49 N A -2.3907
50 G A -1.8963
51 G A -1.8070
52 R A -3.2345
53 Y A -2.3356
54 A A -1.9518
55 E A -2.5331
56 T A -1.9502
57 N A -2.4898
58 K A -2.5329
59 A A -1.3457
60 S A -0.8771
61 K A -1.0180
62 S A -1.3504
63 F A 0.0000
64 S A 0.0000
65 L A 0.0000
66 R A -2.4889
67 I A 0.0000
68 S A -2.3513
69 D A -2.3909
70 L A 0.0000
71 V A -0.2621
72 E A -1.6464
73 D A 0.0000
74 S A -1.0047
75 G A 0.0000
76 T A -0.4213
77 Y A 0.0000
78 H A -1.0040
79 C A 0.0000
80 K A -1.3239
81 A A 0.0000
82 L A 0.5385
83 A A 0.0000
84 F A 1.0879
85 G A -0.0001
86 C A -0.1135
87 Q A -0.4964
88 F A 1.0811
89 Q A 0.1336
90 G A 0.7330
91 Y A 0.9174
92 Y A -0.9808
93 E A -2.4400
94 G A 0.0000
95 G A -1.4294
96 G A 0.0000
97 T A 0.0000
98 I A 0.9312
99 L A 0.0000
100 T A -0.7309
101 V A -1.3856
102 K A -2.3971
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Laboratory of Theory of Biopolymers 2018