| Chain sequence(s) |
A: GGGHKFF
C: GGGHKFF B: GGGHKFF E: GGGHKFF D: GGGHKFF G: GGGHKFF F: GGGHKFF I: GGGHKFF H: GGGHKFF K: GGGHKFF J: GGGHKFF L: GGGHKFF input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:06:26)
[INFO] Main: Simulation completed successfully. (00:06:29)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | -0.9635 | |
| 2 | G | A | -1.3607 | |
| 3 | G | A | -1.4038 | |
| 4 | H | A | -1.6564 | |
| 5 | K | A | -1.3892 | |
| 6 | F | A | 0.9452 | |
| 7 | F | A | 0.4596 | |
| 1 | G | B | -0.8925 | |
| 2 | G | B | -1.1786 | |
| 3 | G | B | -1.7476 | |
| 4 | H | B | -1.5920 | |
| 5 | K | B | -1.3695 | |
| 6 | F | B | 0.0000 | |
| 7 | F | B | 1.2049 | |
| 1 | G | C | -0.7262 | |
| 2 | G | C | -0.6452 | |
| 3 | G | C | -0.4671 | |
| 4 | H | C | 0.0000 | |
| 5 | K | C | 0.0553 | |
| 6 | F | C | 0.2815 | |
| 7 | F | C | 0.0000 | |
| 1 | G | D | -1.0586 | |
| 2 | G | D | -1.0154 | |
| 3 | G | D | -1.0338 | |
| 4 | H | D | -0.3539 | |
| 5 | K | D | 0.0000 | |
| 6 | F | D | 0.4363 | |
| 7 | F | D | -0.6687 | |
| 1 | G | E | -1.0882 | |
| 2 | G | E | -1.4476 | |
| 3 | G | E | -1.7609 | |
| 4 | H | E | -1.4222 | |
| 5 | K | E | -0.5422 | |
| 6 | F | E | 0.0000 | |
| 7 | F | E | 1.5378 | |
| 1 | G | F | -1.0795 | |
| 2 | G | F | -1.6039 | |
| 3 | G | F | -1.7795 | |
| 4 | H | F | -1.4890 | |
| 5 | K | F | -1.0384 | |
| 6 | F | F | 0.0000 | |
| 7 | F | F | 2.5898 | |
| 1 | G | G | -1.0240 | |
| 2 | G | G | -1.4348 | |
| 3 | G | G | -1.7771 | |
| 4 | H | G | -1.8752 | |
| 5 | K | G | -1.3967 | |
| 6 | F | G | 0.0000 | |
| 7 | F | G | 1.9401 | |
| 1 | G | H | -1.1242 | |
| 2 | G | H | -1.5486 | |
| 3 | G | H | -1.8825 | |
| 4 | H | H | -1.9619 | |
| 5 | K | H | -1.7948 | |
| 6 | F | H | 0.0000 | |
| 7 | F | H | 0.0000 | |
| 1 | G | I | -1.2152 | |
| 2 | G | I | -1.5568 | |
| 3 | G | I | -1.6023 | |
| 4 | H | I | -1.6083 | |
| 5 | K | I | -1.4701 | |
| 6 | F | I | 0.0000 | |
| 7 | F | I | 1.0596 | |
| 1 | G | J | -0.8923 | |
| 2 | G | J | -1.4216 | |
| 3 | G | J | -1.5761 | |
| 4 | H | J | -1.2982 | |
| 5 | K | J | -0.1030 | |
| 6 | F | J | 0.0000 | |
| 7 | F | J | 3.1487 | |
| 1 | G | K | -1.0214 | |
| 2 | G | K | -1.3958 | |
| 3 | G | K | -2.0230 | |
| 4 | H | K | -1.9007 | |
| 5 | K | K | -1.2782 | |
| 6 | F | K | 0.0000 | |
| 7 | F | K | 2.4289 | |
| 1 | G | L | -0.9513 | |
| 2 | G | L | -1.4403 | |
| 3 | G | L | -1.4953 | |
| 4 | H | L | -1.4885 | |
| 5 | K | L | -0.9918 | |
| 6 | F | L | 1.9816 | |
| 7 | F | L | 3.0333 |