Project name: query_structure

Status: done

Started: 2026-03-17 01:11:35
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Chain sequence(s) A: VSDVPRDLEVVAATPTSLLISWDAPAVTVRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGGGWLWCVTSKPISINYRT
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:37)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:37)
Show buried residues

Minimal score value
-3.5879
Maximal score value
2.7442
Average score
-0.5369
Total score value
-51.0008

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 V A 1.6989
2 S A 0.1845
3 D A -0.2640
4 V A -1.1027
5 P A 0.0000
6 R A -3.5789
7 D A -3.5879
8 L A -2.2440
9 E A -2.1216
10 V A 0.1004
11 V A 1.5321
12 A A 0.8715
13 A A 0.2844
14 T A -0.5511
15 P A -1.1630
16 T A -1.0101
17 S A -0.5557
18 L A 0.0000
19 L A 0.6964
20 I A 0.0000
21 S A -1.1499
22 W A 0.0000
23 D A -3.4274
24 A A -1.7665
25 P A -0.6094
26 A A 0.1089
27 V A 0.3008
28 T A -0.3883
29 V A -0.6974
30 R A -1.4758
31 Y A -0.9672
32 Y A 0.0000
33 R A -0.9107
34 I A 0.0000
35 T A 0.0000
36 Y A -0.2638
37 G A 0.0000
38 E A -1.4204
39 T A -1.1765
40 G A -1.2062
41 G A -1.3175
42 N A -1.5163
43 S A -0.8121
44 P A -0.2827
45 V A 0.5035
46 Q A -0.7395
47 E A -1.6809
48 F A -0.7882
49 T A -0.4265
50 V A 0.0000
51 P A -1.1810
52 G A -1.3574
53 S A -1.3626
54 K A -2.0306
55 S A -1.3834
56 T A -0.7744
57 A A 0.0000
58 T A 0.2196
59 I A 0.0000
60 S A -0.6690
61 G A -1.0375
62 L A 0.0000
63 K A -2.3440
64 P A -1.6426
65 G A -1.4014
66 V A -1.3491
67 D A -1.9601
68 Y A 0.0000
69 T A -0.6634
70 I A 0.0000
71 T A -0.3887
72 V A 0.0000
73 Y A -0.4004
74 A A 0.0000
75 V A 0.0000
76 T A 0.0000
77 G A 0.4560
78 G A 0.9330
79 G A 0.9145
80 W A 1.9822
81 L A 2.7442
82 W A 2.6175
83 C A 1.8384
84 V A 1.2578
85 T A 0.2882
86 S A 0.0000
87 K A -1.5925
88 P A -1.0625
89 I A -0.6704
90 S A -0.5066
91 I A -0.5090
92 N A -1.6866
93 Y A -1.4070
94 R A -2.4685
95 T A -1.4827
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Laboratory of Theory of Biopolymers 2018