Project name: GP5-4Qmutant [mutate: YS24A, IS42A, VS72A, IS111A, VS159A]

Status: done

Started: 2025-12-13 13:48:06
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Chain sequence(s) A: MLGKCLTACCCSRLLFLWCIVPFYLAVLVQASNNQSSHIQLIYQLTLCELQGTDWLAQKFDWAVETFVIFPVLTHIVSYGALTTSHFLDTVGLATVSTAGYYHGRYVLSSIYAVCALAALICFVIRLAKNCMSWRYSCTRYTNFLLDTKGRLYRWRSPVIVEKGGKVEVEGHLIDLKRVVLDGSAATPLTRVSAELWGRL
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues IS111A,IS42A,VS159A,YS24A,VS72A
Energy difference between WT (input) and mutated protein (by FoldX) 2.46042 kcal/mol

CAUTION: Your mutation/s can destabilize the protein structure

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Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       FoldX:    Building mutant model                                                       (00:01:48)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:02:14)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:03:47)
[INFO]       Main:     Simulation completed successfully.                                          (00:03:49)
Show buried residues

Minimal score value
-2.8041
Maximal score value
3.5924
Average score
0.3211
Total score value
64.212

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 1.3708
2 L A 1.7629
3 G A 0.3094
4 K A -0.5540
5 C A 0.9200
6 L A 1.6894
7 T A 0.3949
8 A A 0.5148
9 C A 0.6301
10 C A 0.4617
11 C A 0.3695
12 S A -0.2086
13 R A -0.7923
14 L A 0.6726
15 L A 0.0000
16 F A 1.1860
17 L A 2.2745
18 W A 2.4337
19 C A 2.0243
20 I A 2.5426
21 V A 2.8254
22 P A 2.0670
23 F A 3.1253
24 S A 2.4017 mutated: YS24A
25 L A 2.6154
26 A A 2.0696
27 V A 2.5421
28 L A 2.2243
29 V A 0.6721
30 Q A -0.3923
31 A A -0.0301
32 S A -1.0523
33 N A -2.2602
34 N A -2.6493
35 Q A -2.4097
36 S A -1.4447
37 S A -1.0067
38 H A -0.9592
39 I A -0.0594
40 Q A -0.6844
41 L A 0.8924
42 S A 0.7046 mutated: IS42A
43 Y A 0.6991
44 Q A 0.2113
45 L A 1.4095
46 T A 0.5869
47 L A 0.4779
48 C A 0.2423
49 E A -0.6839
50 L A -0.2964
51 Q A -1.1652
52 G A -1.4254
53 T A 0.0000
54 D A -2.2333
55 W A -1.1926
56 L A 0.0000
57 A A -1.7349
58 Q A -2.0111
59 K A -1.6569
60 F A -1.1329
61 D A -1.5347
62 W A -0.0532
63 A A 0.0000
64 V A 1.0731
65 E A 0.3236
66 T A 1.6140
67 F A 2.9599
68 V A 3.5924
69 I A 3.2742
70 F A 2.6289
71 P A 2.3166
72 S A 2.1386 mutated: VS72A
73 L A 2.6011
74 T A 0.0000
75 H A 1.6597
76 I A 2.7896
77 V A 1.9991
78 S A 1.6054
79 Y A 1.8909
80 G A 0.8016
81 A A 0.5270
82 L A 1.1330
83 T A 1.0158
84 T A 0.8322
85 S A 0.0000
86 H A 0.0000
87 F A 2.6183
88 L A 2.1083
89 D A 1.2948
90 T A 2.2812
91 V A 2.4680
92 G A 1.6287
93 L A 1.6071
94 A A 1.5421
95 T A 0.9305
96 V A 1.2415
97 S A 0.0000
98 T A 1.0480
99 A A 0.8071
100 G A 1.4830
101 Y A 2.2076
102 Y A 1.6377
103 H A 0.4138
104 G A 0.6726
105 R A 1.0906
106 Y A 2.4970
107 V A 2.6072
108 L A 1.7144
109 S A 0.0000
110 S A 1.6492
111 S A 1.4079 mutated: IS111A
112 Y A 2.0317
113 A A 2.0127
114 V A 2.5729
115 C A 1.9809
116 A A 0.0000
117 L A 3.0028
118 A A 2.1320
119 A A 0.0000
120 L A 3.3730
121 I A 3.3566
122 C A 2.5424
123 F A 0.0000
124 V A 3.2558
125 I A 2.8196
126 R A 1.4110
127 L A 1.7480
128 A A 1.0642
129 K A 0.1956
130 N A -0.1412
131 C A 0.4157
132 M A 0.0174
133 S A 0.0000
134 W A 0.6731
135 R A -0.4936
136 Y A 0.6908
137 S A 0.6726
138 C A 0.6832
139 T A -0.2138
140 R A -1.4258
141 Y A -1.0970
142 T A -1.1703
143 N A -1.8948
144 F A 0.0000
145 L A 0.0000
146 L A -1.7731
147 D A 0.0000
148 T A -2.1931
149 K A -2.7077
150 G A -2.3367
151 R A -2.3552
152 L A -1.2014
153 Y A -1.3549
154 R A -2.2097
155 W A -1.7717
156 R A -2.4701
157 S A -1.2296
158 P A -0.6969
159 S A -0.1348 mutated: VS159A
160 I A 0.0423
161 V A 0.2698
162 E A -2.5590
163 K A -2.8041
164 G A -2.1959
165 G A -2.0215
166 K A -2.3389
167 V A 0.0000
168 E A -2.1166
169 V A 0.0000
170 E A -2.6298
171 G A -1.9470
172 H A -1.8982
173 L A -1.7261
174 I A 0.0000
175 D A -2.0303
176 L A -2.0533
177 K A -2.7577
178 R A -2.2154
179 V A 0.0000
180 V A 0.0000
181 L A -1.1393
182 D A -1.7568
183 G A 0.0000
184 S A -0.5375
185 A A -0.3871
186 A A -0.3827
187 T A 0.0161
188 P A 0.0900
189 L A 0.9905
190 T A 0.1368
191 R A -0.7515
192 V A 0.7700
193 S A -0.0075
194 A A 0.0398
195 E A -0.6571
196 L A 1.1193
197 W A 1.0373
198 G A -0.2012
199 R A -1.0671
200 L A 0.6674
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Laboratory of Theory of Biopolymers 2018