| Chain sequence(s) |
A: AEAEAKAKAEAEAKAK
B: AEAEAKAKAEAEAKAK input PDB |
| Selected Chain(s) | A,B |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:28)
[INFO] Main: Simulation completed successfully. (00:01:28)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | A | A | -2.4577 | |
| 2 | E | A | -4.0539 | |
| 3 | A | A | -2.4777 | |
| 4 | E | A | -3.5679 | |
| 5 | A | A | 0.0000 | |
| 6 | K | A | -4.6291 | |
| 7 | A | A | -3.2207 | |
| 8 | K | A | -3.9519 | |
| 9 | A | A | 0.0000 | |
| 10 | E | A | -4.0004 | |
| 11 | A | A | -2.9019 | |
| 12 | E | A | -3.6452 | |
| 13 | A | A | 0.0000 | |
| 14 | K | A | -3.2379 | |
| 15 | A | A | -2.3356 | |
| 16 | K | A | -2.7546 | |
| 1 | A | B | -2.4256 | |
| 2 | E | B | -3.9951 | |
| 3 | A | B | -2.4780 | |
| 4 | E | B | -3.5724 | |
| 5 | A | B | 0.0000 | |
| 6 | K | B | -4.6452 | |
| 7 | A | B | -3.3066 | |
| 8 | K | B | -4.0447 | |
| 9 | A | B | 0.0000 | |
| 10 | E | B | -4.2456 | |
| 11 | A | B | -3.0680 | |
| 12 | E | B | -3.8378 | |
| 13 | A | B | 0.0000 | |
| 14 | K | B | -3.3351 | |
| 15 | A | B | -2.4107 | |
| 16 | K | B | -2.7783 |