Project name: rfantibody_design_3

Status: done

Started: 2025-07-24 09:59:22
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Chain sequence(s) A: QVQLVESGGGLVQPGGSLRLSCAASGSQATDFSSFSLGWFRQAPGQGLEAVAAIDSETNETYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAANDHGVAYINQQSSYQYWGQGTLVTVSS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:54)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:54)
Show buried residues

Minimal score value
-2.9166
Maximal score value
1.7539
Average score
-0.6777
Total score value
-86.7458

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.7299
2 V A 0.0000
3 Q A -0.8806
4 L A 0.0000
5 V A 1.2319
6 E A 0.4864
7 S A -0.1382
8 G A -0.7214
9 G A 0.1121
10 G A 0.6884
11 L A 1.3940
12 V A -0.1296
13 Q A -1.4523
14 P A -1.8100
15 G A -1.5223
16 G A -1.0000
17 S A -1.2956
18 L A -0.9052
19 R A -2.1417
20 L A 0.0000
21 S A -0.4101
22 C A 0.0000
23 A A -0.0786
24 A A 0.0000
25 S A -0.9882
26 G A -1.3962
27 S A -1.3344
28 Q A -1.7158
29 A A 0.0000
30 T A -1.1604
31 D A -1.6645
32 F A 0.0000
33 S A -1.5475
34 S A -1.4263
35 F A 0.0000
36 S A 0.0000
37 L A 0.0000
38 G A 0.0000
39 W A 0.0000
40 F A 0.0000
41 R A 0.0000
42 Q A -0.7059
43 A A -0.9738
44 P A -0.9645
45 G A -1.2912
46 Q A -1.8536
47 G A -1.2570
48 L A -0.5200
49 E A -1.0062
50 A A -0.6197
51 V A 0.0000
52 A A 0.0000
53 A A 0.0000
54 I A 0.0000
55 D A 0.0000
56 S A -1.5374
57 E A -2.3043
58 T A -1.7786
59 N A -2.2997
60 E A -2.0611
61 T A -0.7696
62 Y A -0.1247
63 Y A -0.5956
64 A A -1.3754
65 D A -2.4414
66 S A -1.7476
67 V A 0.0000
68 K A -2.5715
69 G A -1.7558
70 R A -1.5198
71 F A 0.0000
72 T A -0.7914
73 I A 0.0000
74 S A -0.6351
75 R A -1.2867
76 D A -1.8714
77 N A -2.2915
78 S A -1.8451
79 K A -2.5376
80 N A -2.0629
81 T A 0.0000
82 L A 0.0000
83 Y A -0.6385
84 L A 0.0000
85 Q A -1.2975
86 M A 0.0000
87 N A -1.4902
88 S A -1.3728
89 L A 0.0000
90 R A -2.9166
91 A A -2.0326
92 E A -2.4639
93 D A 0.0000
94 T A -0.4848
95 A A 0.0000
96 V A 0.8871
97 Y A 0.0000
98 Y A 0.3459
99 C A 0.0000
100 A A 0.0000
101 A A 0.0000
102 N A 0.0000
103 D A -1.5999
104 H A -1.5774
105 G A -0.2934
106 V A 0.9052
107 A A 0.0000
108 Y A 0.8381
109 I A 0.1282
110 N A -1.4705
111 Q A -1.3009
112 Q A -1.2838
113 S A -1.0768
114 S A -0.7542
115 Y A 0.0000
116 Q A -1.2426
117 Y A -0.5491
118 W A 0.1072
119 G A 0.0288
120 Q A -0.7814
121 G A 0.1134
122 T A 0.6472
123 L A 1.7539
124 V A 0.0000
125 T A 0.3324
126 V A 0.0000
127 S A -0.7729
128 S A -0.5013
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Laboratory of Theory of Biopolymers 2018