Project name: query_structure

Status: done

Started: 2026-03-17 01:25:40
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Chain sequence(s) A: VSSVPTKLEVVAATPTSLLISWDAPAVTVFYYLITYGETGSSSYGMQTFEVPGSKSTATISGLKPGVDYTITVYAHSSLWGYSHSPISINYRT
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:36)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:37)
Show buried residues

Minimal score value
-2.6959
Maximal score value
2.4953
Average score
-0.2563
Total score value
-23.8318

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 V A 1.7940
2 S A 0.7506
3 S A 0.4898
4 V A 0.1369
5 P A 0.0000
6 T A -1.6546
7 K A -2.6229
8 L A 0.0000
9 E A -1.8286
10 V A 0.1392
11 V A 1.5586
12 A A 0.9024
13 A A 0.2933
14 T A -0.5390
15 P A -1.1416
16 T A -1.0071
17 S A -0.5484
18 L A 0.0000
19 L A 0.7482
20 I A 0.0000
21 S A -0.9464
22 W A 0.0000
23 D A -2.6959
24 A A -1.2578
25 P A -0.0127
26 A A 0.4659
27 V A 0.9058
28 T A 0.5346
29 V A 0.9084
30 F A 1.7156
31 Y A 0.3671
32 Y A 0.0000
33 L A -0.1436
34 I A 0.0000
35 T A -0.3069
36 Y A 0.0000
37 G A 0.0000
38 E A -1.6070
39 T A -1.2049
40 G A -0.8984
41 S A -0.4820
42 S A -0.1016
43 S A 0.0773
44 Y A 0.9791
45 G A 0.0027
46 M A -0.1251
47 Q A -0.6574
48 T A -0.5624
49 F A -0.5720
50 E A -1.4348
51 V A 0.0000
52 P A -0.7715
53 G A -0.3440
54 S A -0.8406
55 K A -2.0570
56 S A -1.4371
57 T A -0.7714
58 A A 0.0000
59 T A 0.2321
60 I A 0.0000
61 S A -0.6664
62 G A -1.0396
63 L A 0.0000
64 K A -2.3627
65 P A -1.6316
66 G A -1.4127
67 V A -1.3671
68 D A -2.0462
69 Y A 0.0000
70 T A -0.9682
71 I A 0.0000
72 T A 0.0511
73 V A 0.0000
74 Y A 0.3924
75 A A 0.0000
76 H A 0.0000
77 S A 1.3004
78 S A 1.7366
79 L A 2.4953
80 W A 2.0210
81 G A 1.2518
82 Y A 1.5305
83 S A 0.5047
84 H A 0.0625
85 S A -0.0399
86 P A 0.0819
87 I A 0.1316
88 S A -0.2929
89 I A -0.6846
90 N A -1.7522
91 Y A -1.4969
92 R A -2.5461
93 T A -1.5134
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Laboratory of Theory of Biopolymers 2018