Project name: 1DQL

Status: done

Started: 2026-03-30 04:26:44
Settings
Chain sequence(s) H: QVQLVESGGGLVQPGGSLRLSCAASGFTFSSYAMHWVRQAPGKGLEWVAVISSDGGNKYYTDSVKGRFTISRNDSKNTLYLQMNSLRTEDTAVFYCARGNPPYSSGWGGGDYWGQGTMVTVSS
L: DIQMTQSPSSLSASVGDRVTITCRASQDIRNDLGWYQQKPGKAPKKLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCLQQNSNWTFGQGTKVDIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:56)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:57)
Show buried residues

Minimal score value
-3.0291
Maximal score value
1.2733
Average score
-0.6849
Total score value
-156.8356

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.4620
2 V H -0.7863
3 Q H -0.9238
4 L H 0.0000
5 V H 0.4424
6 E H 0.0000
7 S H -0.4183
8 G H -0.6867
9 G H -0.1158
11 G H 0.4091
12 L H 1.2733
13 V H -0.0466
14 Q H -1.4331
15 P H -1.8376
16 G H -1.5986
17 G H -1.0247
18 S H -1.0434
19 L H -0.3380
20 R H -1.0951
21 L H 0.0000
22 S H -0.2290
23 C H 0.0000
24 A H -0.4055
25 A H 0.0000
26 S H -0.8206
27 G H -0.9940
28 F H -0.4391
29 T H -0.2966
30 F H 0.0000
35 S H -1.0650
36 S H -0.3511
37 Y H -0.1885
38 A H -0.6428
39 M H 0.0000
40 H H 0.0000
41 W H 0.0000
42 V H 0.0000
43 R H 0.0000
44 Q H -0.7434
45 A H -1.1559
46 P H -0.9234
47 G H -1.4855
48 K H -2.3828
49 G H -1.6405
50 L H 0.0000
51 E H -1.0632
52 W H 0.0000
53 V H 0.0000
54 A H 0.0000
55 V H 0.0000
56 I H 0.0000
57 S H -1.3794
58 S H -1.4095
59 D H -2.4333
62 G H -1.9699
63 G H -1.8635
64 N H -2.0338
65 K H -1.0591
66 Y H -0.2726
67 Y H -0.7381
68 T H -1.2407
69 D H -2.4289
70 S H -1.7274
71 V H 0.0000
72 K H -2.5502
74 G H -1.7745
75 R H -1.7881
76 F H 0.0000
77 T H -0.6979
78 I H 0.0000
79 S H -0.5164
80 R H -1.4415
81 N H -2.1482
82 D H -2.3184
83 S H -1.8089
84 K H -2.6589
85 N H -2.2452
86 T H -1.3398
87 L H 0.0000
88 Y H -0.3013
89 L H 0.0000
90 Q H -0.6908
91 M H 0.0000
92 N H -1.2609
93 S H -1.4021
94 L H 0.0000
95 R H -3.0291
96 T H -2.1501
97 E H -2.5168
98 D H 0.0000
99 T H -0.6902
100 A H 0.0000
101 V H 0.3352
102 F H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 A H 0.0000
106 R H 0.0000
107 G H 0.0000
108 N H 0.0000
109 P H -0.0445
110 P H 0.2511
111 Y H 1.0082
111A S H 0.1698
112B S H -0.2682
112A G H -0.4429
112 W H -0.4581
113 G H -0.4124
114 G H -0.0841
115 G H 0.0000
116 D H -0.2583
117 Y H 0.0229
118 W H -0.1525
119 G H 0.0000
120 Q H -1.3666
121 G H -0.5869
122 T H -0.0251
123 M H 0.5974
124 V H 0.0000
125 T H -0.0192
126 V H 0.0000
127 S H -0.9180
128 S H -0.7624
1 D L -2.3599
2 I L 0.0000
3 Q L -2.3041
4 M L 0.0000
5 T L -1.4538
6 Q L 0.0000
7 S L -0.9224
8 P L -0.7009
9 S L -1.0201
10 S L -1.0317
11 L L -0.4932
12 S L -0.5406
13 A L 0.0000
14 S L -0.1082
15 V L 0.7046
16 G L -0.6462
17 D L -1.9464
18 R L -2.3609
19 V L 0.0000
20 T L -0.6402
21 I L 0.0000
22 T L -0.7940
23 C L 0.0000
24 R L -2.8190
25 A L 0.0000
26 S L -2.1993
27 Q L -2.8892
28 D L -2.8554
29 I L 0.0000
36 R L -2.8521
37 N L -2.1916
38 D L -1.4868
39 L L 0.0000
40 G L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L -1.0310
44 Q L 0.0000
45 K L -1.7919
46 P L -1.2935
47 G L -1.6186
48 K L -2.6075
49 A L -1.6288
50 P L 0.0000
51 K L -1.6172
52 K L 0.0000
53 L L 0.0000
54 I L 0.0000
55 Y L 0.4319
56 A L -0.4089
57 A L 0.0000
65 S L -0.2886
66 S L 0.1610
67 L L 0.4405
68 Q L -0.2153
69 S L -0.4209
70 G L -0.5710
71 V L 0.0000
72 P L -0.3958
74 S L -0.4183
75 R L -0.7999
76 F L 0.0000
77 S L -0.3275
78 G L -0.1646
79 S L -0.7379
80 G L -1.3644
83 S L -1.7345
84 G L -2.3099
85 T L -2.3805
86 D L -2.3935
87 F L 0.0000
88 T L -0.7074
89 L L 0.0000
90 T L -0.6336
91 I L 0.0000
92 S L -1.4006
93 S L -1.1510
94 L L 0.0000
95 Q L -0.7891
96 P L -0.6537
97 E L -1.8718
98 D L 0.0000
99 F L -0.3718
100 A L 0.0000
101 T L -1.0429
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 L L 0.0000
106 Q L 0.0000
107 Q L 0.0000
108 N L -1.2578
114 S L -0.8384
115 N L -0.7179
116 W L 0.0000
117 T L -0.8788
118 F L -0.5007
119 G L 0.0000
120 Q L -1.9067
121 G L 0.0000
122 T L 0.0000
123 K L -2.0267
124 V L 0.0000
125 D L -0.3750
126 I L 1.2301
127 K L -0.7316
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Laboratory of Theory of Biopolymers 2018