| Chain sequence(s) |
H: QVQLVESGGGLVQPGGSLRLSCAASGFTFSSYAMHWVRQAPGKGLEWVAVISSDGGNKYYTDSVKGRFTISRNDSKNTLYLQMNSLRTEDTAVFYCARGNPPYSSGWGGGDYWGQGTMVTVSS
L: DIQMTQSPSSLSASVGDRVTITCRASQDIRNDLGWYQQKPGKAPKKLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCLQQNSNWTFGQGTKVDIK input PDB |
| Selected Chain(s) | H,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:56)
[INFO] Main: Simulation completed successfully. (00:00:57)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | H | -1.4620 | |
| 2 | V | H | -0.7863 | |
| 3 | Q | H | -0.9238 | |
| 4 | L | H | 0.0000 | |
| 5 | V | H | 0.4424 | |
| 6 | E | H | 0.0000 | |
| 7 | S | H | -0.4183 | |
| 8 | G | H | -0.6867 | |
| 9 | G | H | -0.1158 | |
| 11 | G | H | 0.4091 | |
| 12 | L | H | 1.2733 | |
| 13 | V | H | -0.0466 | |
| 14 | Q | H | -1.4331 | |
| 15 | P | H | -1.8376 | |
| 16 | G | H | -1.5986 | |
| 17 | G | H | -1.0247 | |
| 18 | S | H | -1.0434 | |
| 19 | L | H | -0.3380 | |
| 20 | R | H | -1.0951 | |
| 21 | L | H | 0.0000 | |
| 22 | S | H | -0.2290 | |
| 23 | C | H | 0.0000 | |
| 24 | A | H | -0.4055 | |
| 25 | A | H | 0.0000 | |
| 26 | S | H | -0.8206 | |
| 27 | G | H | -0.9940 | |
| 28 | F | H | -0.4391 | |
| 29 | T | H | -0.2966 | |
| 30 | F | H | 0.0000 | |
| 35 | S | H | -1.0650 | |
| 36 | S | H | -0.3511 | |
| 37 | Y | H | -0.1885 | |
| 38 | A | H | -0.6428 | |
| 39 | M | H | 0.0000 | |
| 40 | H | H | 0.0000 | |
| 41 | W | H | 0.0000 | |
| 42 | V | H | 0.0000 | |
| 43 | R | H | 0.0000 | |
| 44 | Q | H | -0.7434 | |
| 45 | A | H | -1.1559 | |
| 46 | P | H | -0.9234 | |
| 47 | G | H | -1.4855 | |
| 48 | K | H | -2.3828 | |
| 49 | G | H | -1.6405 | |
| 50 | L | H | 0.0000 | |
| 51 | E | H | -1.0632 | |
| 52 | W | H | 0.0000 | |
| 53 | V | H | 0.0000 | |
| 54 | A | H | 0.0000 | |
| 55 | V | H | 0.0000 | |
| 56 | I | H | 0.0000 | |
| 57 | S | H | -1.3794 | |
| 58 | S | H | -1.4095 | |
| 59 | D | H | -2.4333 | |
| 62 | G | H | -1.9699 | |
| 63 | G | H | -1.8635 | |
| 64 | N | H | -2.0338 | |
| 65 | K | H | -1.0591 | |
| 66 | Y | H | -0.2726 | |
| 67 | Y | H | -0.7381 | |
| 68 | T | H | -1.2407 | |
| 69 | D | H | -2.4289 | |
| 70 | S | H | -1.7274 | |
| 71 | V | H | 0.0000 | |
| 72 | K | H | -2.5502 | |
| 74 | G | H | -1.7745 | |
| 75 | R | H | -1.7881 | |
| 76 | F | H | 0.0000 | |
| 77 | T | H | -0.6979 | |
| 78 | I | H | 0.0000 | |
| 79 | S | H | -0.5164 | |
| 80 | R | H | -1.4415 | |
| 81 | N | H | -2.1482 | |
| 82 | D | H | -2.3184 | |
| 83 | S | H | -1.8089 | |
| 84 | K | H | -2.6589 | |
| 85 | N | H | -2.2452 | |
| 86 | T | H | -1.3398 | |
| 87 | L | H | 0.0000 | |
| 88 | Y | H | -0.3013 | |
| 89 | L | H | 0.0000 | |
| 90 | Q | H | -0.6908 | |
| 91 | M | H | 0.0000 | |
| 92 | N | H | -1.2609 | |
| 93 | S | H | -1.4021 | |
| 94 | L | H | 0.0000 | |
| 95 | R | H | -3.0291 | |
| 96 | T | H | -2.1501 | |
| 97 | E | H | -2.5168 | |
| 98 | D | H | 0.0000 | |
| 99 | T | H | -0.6902 | |
| 100 | A | H | 0.0000 | |
| 101 | V | H | 0.3352 | |
| 102 | F | H | 0.0000 | |
| 103 | Y | H | 0.0000 | |
| 104 | C | H | 0.0000 | |
| 105 | A | H | 0.0000 | |
| 106 | R | H | 0.0000 | |
| 107 | G | H | 0.0000 | |
| 108 | N | H | 0.0000 | |
| 109 | P | H | -0.0445 | |
| 110 | P | H | 0.2511 | |
| 111 | Y | H | 1.0082 | |
| 111A | S | H | 0.1698 | |
| 112B | S | H | -0.2682 | |
| 112A | G | H | -0.4429 | |
| 112 | W | H | -0.4581 | |
| 113 | G | H | -0.4124 | |
| 114 | G | H | -0.0841 | |
| 115 | G | H | 0.0000 | |
| 116 | D | H | -0.2583 | |
| 117 | Y | H | 0.0229 | |
| 118 | W | H | -0.1525 | |
| 119 | G | H | 0.0000 | |
| 120 | Q | H | -1.3666 | |
| 121 | G | H | -0.5869 | |
| 122 | T | H | -0.0251 | |
| 123 | M | H | 0.5974 | |
| 124 | V | H | 0.0000 | |
| 125 | T | H | -0.0192 | |
| 126 | V | H | 0.0000 | |
| 127 | S | H | -0.9180 | |
| 128 | S | H | -0.7624 | |
| 1 | D | L | -2.3599 | |
| 2 | I | L | 0.0000 | |
| 3 | Q | L | -2.3041 | |
| 4 | M | L | 0.0000 | |
| 5 | T | L | -1.4538 | |
| 6 | Q | L | 0.0000 | |
| 7 | S | L | -0.9224 | |
| 8 | P | L | -0.7009 | |
| 9 | S | L | -1.0201 | |
| 10 | S | L | -1.0317 | |
| 11 | L | L | -0.4932 | |
| 12 | S | L | -0.5406 | |
| 13 | A | L | 0.0000 | |
| 14 | S | L | -0.1082 | |
| 15 | V | L | 0.7046 | |
| 16 | G | L | -0.6462 | |
| 17 | D | L | -1.9464 | |
| 18 | R | L | -2.3609 | |
| 19 | V | L | 0.0000 | |
| 20 | T | L | -0.6402 | |
| 21 | I | L | 0.0000 | |
| 22 | T | L | -0.7940 | |
| 23 | C | L | 0.0000 | |
| 24 | R | L | -2.8190 | |
| 25 | A | L | 0.0000 | |
| 26 | S | L | -2.1993 | |
| 27 | Q | L | -2.8892 | |
| 28 | D | L | -2.8554 | |
| 29 | I | L | 0.0000 | |
| 36 | R | L | -2.8521 | |
| 37 | N | L | -2.1916 | |
| 38 | D | L | -1.4868 | |
| 39 | L | L | 0.0000 | |
| 40 | G | L | 0.0000 | |
| 41 | W | L | 0.0000 | |
| 42 | Y | L | 0.0000 | |
| 43 | Q | L | -1.0310 | |
| 44 | Q | L | 0.0000 | |
| 45 | K | L | -1.7919 | |
| 46 | P | L | -1.2935 | |
| 47 | G | L | -1.6186 | |
| 48 | K | L | -2.6075 | |
| 49 | A | L | -1.6288 | |
| 50 | P | L | 0.0000 | |
| 51 | K | L | -1.6172 | |
| 52 | K | L | 0.0000 | |
| 53 | L | L | 0.0000 | |
| 54 | I | L | 0.0000 | |
| 55 | Y | L | 0.4319 | |
| 56 | A | L | -0.4089 | |
| 57 | A | L | 0.0000 | |
| 65 | S | L | -0.2886 | |
| 66 | S | L | 0.1610 | |
| 67 | L | L | 0.4405 | |
| 68 | Q | L | -0.2153 | |
| 69 | S | L | -0.4209 | |
| 70 | G | L | -0.5710 | |
| 71 | V | L | 0.0000 | |
| 72 | P | L | -0.3958 | |
| 74 | S | L | -0.4183 | |
| 75 | R | L | -0.7999 | |
| 76 | F | L | 0.0000 | |
| 77 | S | L | -0.3275 | |
| 78 | G | L | -0.1646 | |
| 79 | S | L | -0.7379 | |
| 80 | G | L | -1.3644 | |
| 83 | S | L | -1.7345 | |
| 84 | G | L | -2.3099 | |
| 85 | T | L | -2.3805 | |
| 86 | D | L | -2.3935 | |
| 87 | F | L | 0.0000 | |
| 88 | T | L | -0.7074 | |
| 89 | L | L | 0.0000 | |
| 90 | T | L | -0.6336 | |
| 91 | I | L | 0.0000 | |
| 92 | S | L | -1.4006 | |
| 93 | S | L | -1.1510 | |
| 94 | L | L | 0.0000 | |
| 95 | Q | L | -0.7891 | |
| 96 | P | L | -0.6537 | |
| 97 | E | L | -1.8718 | |
| 98 | D | L | 0.0000 | |
| 99 | F | L | -0.3718 | |
| 100 | A | L | 0.0000 | |
| 101 | T | L | -1.0429 | |
| 102 | Y | L | 0.0000 | |
| 103 | Y | L | 0.0000 | |
| 104 | C | L | 0.0000 | |
| 105 | L | L | 0.0000 | |
| 106 | Q | L | 0.0000 | |
| 107 | Q | L | 0.0000 | |
| 108 | N | L | -1.2578 | |
| 114 | S | L | -0.8384 | |
| 115 | N | L | -0.7179 | |
| 116 | W | L | 0.0000 | |
| 117 | T | L | -0.8788 | |
| 118 | F | L | -0.5007 | |
| 119 | G | L | 0.0000 | |
| 120 | Q | L | -1.9067 | |
| 121 | G | L | 0.0000 | |
| 122 | T | L | 0.0000 | |
| 123 | K | L | -2.0267 | |
| 124 | V | L | 0.0000 | |
| 125 | D | L | -0.3750 | |
| 126 | I | L | 1.2301 | |
| 127 | K | L | -0.7316 |