| Chain sequence(s) |
H: QVQLQQPGGELVKPGASVKMSCKASGYTFTSYNMHWVKQTPRRGLEWIGAIYSGNGDTSYNQKFKGKATLTVDKSSSTAYMQINSLTSEDSAVYFCSRERDTRFGNWGAGTSVTVSA
L: NIVLTQSPASLAVSLGLRATISCRASESVDIYGNSFMHWYQQKPGQPPKLLIYLASNLESGVPARFSGSGSRTDFTLTIDPVEADDAATYYCQQNNEDPYTFGGGTKLEIK input PDB |
| Selected Chain(s) | H,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Mutated residues | QR43L,YF42L,SG79L,TS90L,YF55L,SN77L,LF89L,TM88L,IS21L,GS120L,KR127L,IS31L,YW116L,QH105L,AV19L |
| Energy difference between WT (input) and mutated protein (by FoldX) | 15.724 kcal/mol
CAUTION: Your mutation/s can destabilize the protein structure |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] FoldX: Building mutant model (00:00:42)
[INFO] FoldX: Starting FoldX energy minimalization (00:05:20)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:06:19)
[INFO] Main: Simulation completed successfully. (00:06:20)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | H | -1.3282 | |
| 2 | V | H | -0.8351 | |
| 3 | Q | H | -1.3088 | |
| 4 | L | H | 0.0000 | |
| 5 | Q | H | -1.3413 | |
| 6 | Q | H | -1.0047 | |
| 7 | P | H | -1.0265 | |
| 8 | G | H | -1.0462 | |
| 9 | G | H | -0.8557 | |
| 11 | E | H | -0.7083 | |
| 12 | L | H | 0.6102 | |
| 13 | V | H | -0.4352 | |
| 14 | K | H | -1.6232 | |
| 15 | P | H | -1.3909 | |
| 16 | G | H | -1.1819 | |
| 17 | A | H | -0.9894 | |
| 18 | S | H | -1.0671 | |
| 19 | V | H | 0.0000 | |
| 20 | K | H | -1.2592 | |
| 21 | M | H | 0.0000 | |
| 22 | S | H | -0.6151 | |
| 23 | C | H | 0.0000 | |
| 24 | K | H | -1.3717 | |
| 25 | A | H | 0.0000 | |
| 26 | S | H | -0.9191 | |
| 27 | G | H | -0.8251 | |
| 28 | Y | H | -0.2852 | |
| 29 | T | H | -0.1798 | |
| 30 | F | H | 0.0000 | |
| 35 | T | H | -0.5919 | |
| 36 | S | H | -0.5125 | |
| 37 | Y | H | -0.7005 | |
| 38 | N | H | -0.9099 | |
| 39 | M | H | 0.0000 | |
| 40 | H | H | 0.0000 | |
| 41 | W | H | 0.0000 | |
| 42 | V | H | 0.0000 | |
| 43 | K | H | 0.0000 | |
| 44 | Q | H | -0.8030 | |
| 45 | T | H | -1.6082 | |
| 46 | P | H | -1.6813 | |
| 47 | R | H | -2.9194 | |
| 48 | R | H | -2.9664 | |
| 49 | G | H | -1.7127 | |
| 50 | L | H | 0.0000 | |
| 51 | E | H | -0.8866 | |
| 52 | W | H | 0.0000 | |
| 53 | I | H | 0.0000 | |
| 54 | G | H | 0.0000 | |
| 55 | A | H | 0.0000 | |
| 56 | I | H | 0.0000 | |
| 57 | Y | H | -0.4639 | |
| 58 | S | H | 0.0000 | |
| 59 | G | H | -1.1703 | |
| 62 | N | H | -1.8611 | |
| 63 | G | H | -1.7281 | |
| 64 | D | H | -2.1457 | |
| 65 | T | H | -0.9779 | |
| 66 | S | H | -0.8984 | |
| 67 | Y | H | -1.2204 | |
| 68 | N | H | 0.0000 | |
| 69 | Q | H | -2.7588 | |
| 70 | K | H | -2.7622 | |
| 71 | F | H | 0.0000 | |
| 72 | K | H | -2.7661 | |
| 74 | G | H | -1.8977 | |
| 75 | K | H | -1.6575 | |
| 76 | A | H | 0.0000 | |
| 77 | T | H | -0.7305 | |
| 78 | L | H | 0.0000 | |
| 79 | T | H | -0.3722 | |
| 80 | V | H | -0.3262 | |
| 81 | D | H | -1.0899 | |
| 82 | K | H | -1.3356 | |
| 83 | S | H | -0.8540 | |
| 84 | S | H | -0.7805 | |
| 85 | S | H | -0.8638 | |
| 86 | T | H | 0.0000 | |
| 87 | A | H | 0.0000 | |
| 88 | Y | H | -0.2140 | |
| 89 | M | H | 0.0000 | |
| 90 | Q | H | -0.8905 | |
| 91 | I | H | 0.0000 | |
| 92 | N | H | -0.9480 | |
| 93 | S | H | -0.9547 | |
| 94 | L | H | 0.0000 | |
| 95 | T | H | -1.3020 | |
| 96 | S | H | -1.4477 | |
| 97 | E | H | -1.9700 | |
| 98 | D | H | 0.0000 | |
| 99 | S | H | -0.6098 | |
| 100 | A | H | -0.5001 | |
| 101 | V | H | 0.1396 | |
| 102 | Y | H | 0.0000 | |
| 103 | F | H | 0.0000 | |
| 104 | C | H | 0.0000 | |
| 105 | S | H | 0.0000 | |
| 106 | R | H | 0.0000 | |
| 107 | E | H | -1.7611 | |
| 108 | R | H | -3.0673 | |
| 109 | D | H | -2.8346 | |
| 113 | T | H | -1.5560 | |
| 114 | R | H | -1.4966 | |
| 115 | F | H | 0.0000 | |
| 116 | G | H | -1.4466 | |
| 117 | N | H | -0.9082 | |
| 118 | W | H | -0.5677 | |
| 119 | G | H | 0.0000 | |
| 120 | A | H | -0.6086 | |
| 121 | G | H | 0.0000 | |
| 122 | T | H | 0.0000 | |
| 123 | S | H | -0.3160 | |
| 124 | V | H | 0.0000 | |
| 125 | T | H | -0.3059 | |
| 126 | V | H | 0.0000 | |
| 127 | S | H | -0.4213 | |
| 128 | A | H | -0.4371 | |
| 1 | N | L | -1.6805 | |
| 2 | I | L | 0.0000 | |
| 3 | V | L | 0.7915 | |
| 4 | L | L | 0.0000 | |
| 5 | T | L | -0.5342 | |
| 6 | Q | L | 0.0000 | |
| 7 | S | L | -0.5118 | |
| 8 | P | L | -0.4136 | |
| 9 | A | L | -0.4652 | |
| 10 | S | L | -0.7868 | |
| 11 | L | L | -0.3151 | |
| 12 | A | L | -0.6536 | |
| 13 | V | L | 0.0000 | |
| 14 | S | L | -0.4924 | |
| 15 | L | L | -0.0092 | |
| 16 | G | L | -0.4473 | |
| 17 | L | L | -0.0560 | |
| 18 | R | L | -1.9081 | |
| 19 | V | L | 0.0000 | mutated: AV19L |
| 20 | T | L | -0.7806 | |
| 21 | S | L | 0.0000 | mutated: IS21L |
| 22 | S | L | -0.7341 | |
| 23 | C | L | 0.0000 | |
| 24 | R | L | -2.5400 | |
| 25 | A | L | 0.0000 | |
| 26 | S | L | -1.2889 | |
| 27 | E | L | -2.2945 | |
| 28 | S | L | -2.1676 | |
| 29 | V | L | 0.0000 | |
| 30 | D | L | -1.5119 | |
| 31 | S | L | -0.4137 | mutated: IS31L |
| 34 | Y | L | 0.7083 | |
| 35 | G | L | -0.3909 | |
| 36 | N | L | -1.0442 | |
| 37 | S | L | -1.0540 | |
| 38 | F | L | -0.4818 | |
| 39 | M | L | 0.0000 | |
| 40 | H | L | 0.0000 | |
| 41 | W | L | 0.0000 | |
| 42 | F | L | 0.0000 | mutated: YF42L |
| 43 | R | L | 0.0000 | mutated: QR43L |
| 44 | Q | L | -1.3012 | |
| 45 | K | L | -1.7981 | |
| 46 | P | L | -1.1592 | |
| 47 | G | L | -1.2836 | |
| 48 | Q | L | -1.7482 | |
| 49 | P | L | -1.0299 | |
| 50 | P | L | 0.0000 | |
| 51 | K | L | -1.4209 | |
| 52 | L | L | 0.0000 | |
| 53 | L | L | 0.0000 | |
| 54 | I | L | 0.0000 | |
| 55 | F | L | -0.1431 | mutated: YF55L |
| 56 | L | L | -0.3566 | |
| 57 | A | L | 0.0000 | |
| 65 | S | L | -0.6678 | |
| 66 | N | L | -0.6360 | |
| 67 | L | L | -0.2703 | |
| 68 | E | L | -0.5667 | |
| 69 | S | L | -0.5818 | |
| 70 | G | L | -0.5857 | |
| 71 | V | L | 0.0000 | |
| 72 | P | L | -0.4454 | |
| 74 | A | L | -0.6385 | |
| 75 | R | L | -1.5411 | |
| 76 | F | L | 0.0000 | |
| 77 | N | L | -1.6049 | mutated: SN77L |
| 78 | G | L | -0.7421 | |
| 79 | G | L | -0.8022 | mutated: SG79L |
| 80 | G | L | -1.3922 | |
| 83 | S | L | -2.0130 | |
| 84 | R | L | -3.1034 | |
| 85 | T | L | -2.6659 | |
| 86 | D | L | -2.5613 | |
| 87 | F | L | 0.0000 | |
| 88 | M | L | -0.5384 | mutated: TM88L |
| 89 | F | L | 0.0000 | mutated: LF89L |
| 90 | S | L | 0.0000 | mutated: TS90L |
| 91 | I | L | 0.0000 | |
| 92 | D | L | -2.5716 | |
| 93 | P | L | -1.5599 | |
| 94 | V | L | 0.0000 | |
| 95 | E | L | -1.6196 | |
| 96 | A | L | -1.3799 | |
| 97 | D | L | -2.1048 | |
| 98 | D | L | 0.0000 | |
| 99 | A | L | -1.4789 | |
| 100 | A | L | 0.0000 | |
| 101 | T | L | -1.0289 | |
| 102 | Y | L | 0.0000 | |
| 103 | Y | L | 0.0000 | |
| 104 | C | L | 0.0000 | |
| 105 | H | L | 0.0000 | mutated: QH105L |
| 106 | Q | L | 0.0000 | |
| 107 | N | L | -0.7660 | |
| 108 | N | L | -1.3819 | |
| 109 | E | L | -1.8649 | |
| 114 | D | L | -2.2915 | |
| 115 | P | L | 0.0000 | |
| 116 | W | L | -0.7205 | mutated: YW116L |
| 117 | T | L | -0.2586 | |
| 118 | F | L | 0.0000 | |
| 119 | G | L | 0.0000 | |
| 120 | S | L | -0.8142 | mutated: GS120L |
| 121 | G | L | 0.0000 | |
| 122 | T | L | 0.0000 | |
| 123 | K | L | -1.7158 | |
| 124 | L | L | 0.0000 | |
| 125 | E | L | -1.2869 | |
| 126 | I | L | -1.0099 | |
| 127 | R | L | -1.4450 | mutated: KR127L |