Project name: 8d481b6ad3cc094

Status: done

Started: 2024-06-14 05:07:46
Settings
Chain sequence(s) A: AKCVSYGVMEVQDAWQQGWTGTGVTVAVLDTGVNTHPDLNIRGGASFVAGEPSTQDGNGHGTHVAGTVAGVAPSASLYAVKVLGADGSGSVSSIAQGLEWAGNNGMHVANLSLGSPSPSATLEQAVNSATSRGVLVVAASGNSGAGNVGFPARYANAMAVGATDQNNQRASFSQYGPGLDVLAPGVNVQSTYPGSTYASLNGTCPATPHVAGLAALLAARNPTWTNAQVRDRLESTATTLGNSFYYGKGLINVQAAAQ
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:00)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:01)
Show buried residues

Minimal score value
-2.7994
Maximal score value
0.5959
Average score
-0.5964
Total score value
-153.8623

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 A A -0.9333
2 K A -1.7339
3 C A 0.0000
4 V A -0.5715
5 S A 0.0000
6 Y A -0.6280
7 G A -0.8270
8 V A -0.4840
9 M A 0.0000
10 E A -2.3049
11 V A 0.0000
12 Q A -2.4346
13 D A -2.6031
14 A A 0.0000
15 W A -1.7027
16 Q A -2.3457
17 Q A -2.2182
18 G A -1.5703
19 W A -0.9456
20 T A -0.6292
21 G A 0.0000
22 T A -0.4933
23 G A -0.7174
24 V A 0.0000
25 T A -0.6441
26 V A 0.0000
27 A A 0.0000
28 V A 0.0000
29 L A 0.0000
30 D A 0.0000
31 T A 0.0000
32 G A 0.0000
33 V A 0.0000
34 N A -0.8650
35 T A -0.6459
36 H A 0.0000
37 P A -0.8427
38 D A -1.3626
39 L A 0.0000
40 N A -1.0201
41 I A -0.9670
42 R A -1.8613
43 G A -1.0893
44 G A -0.7849
45 A A -0.2271
46 S A -0.3066
47 F A 0.1079
48 V A -0.1182
49 A A -0.2512
50 G A -0.7387
51 E A -1.1214
52 P A -0.7730
53 S A -0.8974
54 T A -0.9090
55 Q A -1.7022
56 D A 0.0000
57 G A -1.5427
58 N A -1.5049
59 G A 0.0000
60 H A -0.3479
61 G A 0.0000
62 T A 0.0000
63 H A 0.0000
64 V A 0.0000
65 A A 0.0000
66 G A 0.0000
67 T A 0.0000
68 V A 0.0000
69 A A 0.0000
70 G A 0.0000
71 V A 0.0000
72 A A 0.0000
73 P A -0.3132
74 S A -0.4081
75 A A 0.0000
76 S A -0.7046
77 L A 0.0000
78 Y A -0.4485
79 A A 0.0000
80 V A 0.0000
81 K A 0.0000
82 V A 0.0000
83 L A 0.0000
84 G A 0.0000
85 A A -1.6532
86 D A -2.2386
87 G A -1.5209
88 S A -1.1713
89 G A -0.6047
90 S A 0.0646
91 V A 0.5438
92 S A 0.0614
93 S A 0.0000
94 I A 0.0000
95 A A 0.0000
96 Q A -1.0554
97 G A 0.0000
98 L A 0.0000
99 E A -2.4476
100 W A -1.4847
101 A A 0.0000
102 G A 0.0000
103 N A -2.5502
104 N A -2.2395
105 G A -1.8232
106 M A 0.0000
107 H A -1.0992
108 V A 0.0000
109 A A 0.0000
110 N A 0.0000
111 L A 0.0000
112 S A 0.0000
113 L A -0.2920
114 G A -0.7191
115 S A -0.3913
116 P A -0.8710
117 S A -0.5285
118 P A -0.6940
119 S A -0.4996
120 A A -0.6458
121 T A -0.8184
122 L A 0.0000
123 E A -2.0329
124 Q A -2.1284
125 A A 0.0000
126 V A 0.0000
127 N A -1.8347
128 S A -1.8010
129 A A 0.0000
130 T A -1.4849
131 S A -1.3922
132 R A -2.7265
133 G A -1.6324
134 V A 0.0000
135 L A 0.0000
136 V A 0.0000
137 V A 0.0000
138 A A 0.0000
139 A A 0.0000
140 S A 0.0000
141 G A -0.9016
142 N A -1.3128
143 S A -0.9059
144 G A -0.6659
145 A A -0.7193
146 G A -0.5549
147 N A -1.5488
148 V A 0.0000
149 G A -1.1756
150 F A -0.8970
151 P A 0.0000
152 A A 0.0000
153 R A -1.7973
154 Y A 0.0000
155 A A -0.8568
156 N A -1.2989
157 A A 0.0000
158 M A 0.0000
159 A A 0.0000
160 V A 0.0000
161 G A 0.0000
162 A A 0.0000
163 T A 0.0000
164 D A -2.1241
165 Q A -2.3435
166 N A -2.3665
167 N A -1.8329
168 Q A -2.0563
169 R A -1.1120
170 A A 0.0000
171 S A -0.4868
172 F A -0.4153
173 S A 0.0000
174 Q A -0.7102
175 Y A -0.1501
176 G A 0.0000
177 P A -0.5527
178 G A -0.9373
179 L A 0.0000
180 D A -0.7048
181 V A 0.0000
182 L A 0.0000
183 A A 0.0000
184 P A 0.0000
185 G A 0.0000
186 V A -1.3775
187 N A -1.8329
188 V A 0.0000
189 Q A -1.0929
190 S A 0.0000
191 T A 0.0000
192 Y A 0.1420
193 P A -0.4741
194 G A -0.5233
195 S A -0.5046
196 T A 0.0350
197 Y A 0.1048
198 A A -0.0185
199 S A -0.7317
200 L A -0.7596
201 N A -1.5862
202 G A 0.0000
203 T A 0.0000
204 C A -0.2777
205 P A 0.0000
206 A A 0.0000
207 T A 0.0000
208 P A 0.0000
209 H A 0.0000
210 V A 0.0000
211 A A 0.0000
212 G A 0.0000
213 L A 0.0000
214 A A 0.0000
215 A A 0.0000
216 L A 0.0000
217 L A 0.0000
218 A A -0.6906
219 A A -0.7158
220 R A -1.1438
221 N A -0.7802
222 P A -0.5977
223 T A -0.3404
224 W A -0.3452
225 T A -0.9017
226 N A -1.2816
227 A A -1.2949
228 Q A -1.7867
229 V A 0.0000
230 R A -1.9312
231 D A -2.7994
232 R A -2.1204
233 L A 0.0000
234 E A -1.8678
235 S A -1.4458
236 T A -1.1387
237 A A -0.7472
238 T A -0.4089
239 T A -0.5831
240 L A -0.4651
241 G A -0.8019
242 N A -0.9994
243 S A -0.3904
244 F A 0.5354
245 Y A 0.5959
246 Y A -0.1301
247 G A 0.0000
248 K A -1.3017
249 G A 0.0000
250 L A 0.0000
251 I A 0.0000
252 N A -0.7289
253 V A 0.0000
254 Q A -1.4200
255 A A -0.9441
256 A A 0.0000
257 A A -1.1576
258 Q A -1.2650
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Laboratory of Theory of Biopolymers 2018