| Chain sequence(s) |
A: APGECKHGRCPPGICCSQYGYCGTGPAYC
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:03)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:03)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:03)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:03)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:03)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:48)
[INFO] Main: Simulation completed successfully. (00:00:48)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | A | A | -0.6530 | |
| 2 | P | A | -0.7093 | |
| 3 | G | A | -0.7410 | |
| 4 | E | A | -1.8946 | |
| 5 | C | A | -2.0140 | |
| 6 | K | A | -3.0716 | |
| 7 | H | A | -2.7637 | |
| 8 | G | A | -2.2659 | |
| 9 | R | A | -2.8055 | |
| 10 | C | A | -1.2478 | |
| 11 | P | A | -0.5367 | |
| 12 | P | A | -0.5823 | |
| 13 | G | A | -0.1651 | |
| 14 | I | A | 0.6339 | |
| 15 | C | A | 0.7191 | |
| 16 | C | A | 0.3704 | |
| 17 | S | A | 0.0000 | |
| 18 | Q | A | -0.0390 | |
| 19 | Y | A | 0.9126 | |
| 20 | G | A | -0.1002 | |
| 21 | Y | A | 0.4782 | |
| 22 | C | A | 0.1259 | |
| 23 | G | A | 0.6060 | |
| 24 | T | A | 0.4090 | |
| 25 | G | A | 0.2685 | |
| 26 | P | A | 0.1672 | |
| 27 | A | A | 0.4574 | |
| 28 | Y | A | 1.2126 | |
| 29 | C | A | 0.9470 |