Project name: 202(5)

Status: done

Started: 2026-01-20 09:09:23
Settings
Chain sequence(s) A: KWCFRVCYRMICYRRCR
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:18)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:18)
Show buried residues

Minimal score value
-2.4741
Maximal score value
2.6353
Average score
-0.2288
Total score value
-3.8895

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 K A -1.2678
2 W A 0.0539
3 C A -0.8675
4 F A -1.0454
5 R A -1.7856
6 V A -0.1103
7 C A 1.4459
8 Y A 1.7824
9 R A 0.0089
10 M A 1.5436
11 I A 2.6353
12 C A 1.5625
13 Y A 0.3145
14 R A -2.3069
15 R A -2.4741
16 C A -1.5216
17 R A -1.8573
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018