Project name: 8db9219d1e1ba91

Status: done

Started: 2026-06-10 12:55:43
Settings
Chain sequence(s) A: EVQLVESGGGLEQPGGSLRLSCAGSGFTFRDYAMTWVRQAPGKGLEWVSSISGSGGNTYYASVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAKDRGLDVWGQGTTVTVSSASTKGPSVFPLAPCESTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTKTYTCNVDHKPSNTKVDKRVE
C: VQLVESGGGLEQPGGSLRLSCAGSGFTFRDYAMTWVRQAPGKGLEWVSSISGSSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAKDRLDVWGQGTTVTVSSASTKGPSVFPLAPESTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTKTYTCNVDHKPSNTKVDKRVE
B: DIVMTQSPLSLPVTPGEPASISCRSSQSLLYGYNYLDWYLQKSGQSPQLLIYLGSNRASGVPDRFSGSGSGTDFTLKISRVEAEDVGFYYCMQALQTPYTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRG
D: IVMTQSPLSLPVTPGEPASISCRSSQSLLLDWYLQKSGQSPQLLIYGSNRASGVPDRFSGSGGTDFTLKISRVEAEDVGFYYCMQALQTPYTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE
input PDB
Selected Chain(s) A,C,B,D
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:08:21)
[INFO]       Main:     Simulation completed successfully.                                          (00:08:29)
Show buried residues

Minimal score value
-3.6819
Maximal score value
2.0798
Average score
-0.731
Total score value
-605.9924

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E A -1.7964
2 V A -0.7528
3 Q A -0.9798
4 L A 0.0000
5 V A 0.3618
6 E A 0.0000
7 S A -0.5113
8 G A -0.6166
9 G A -0.5553
10 G A -0.6710
11 L A -0.5858
12 E A -1.4836
13 Q A -1.8716
14 P A -1.9732
15 G A -1.6419
16 G A -1.4379
17 S A -1.4631
18 L A -0.8595
19 R A -1.1713
20 L A 0.0000
21 S A -0.2024
22 C A 0.0000
23 A A -0.4417
24 G A -0.4767
25 S A -0.8337
26 G A -0.8886
27 F A -0.7456
28 T A -1.1601
29 F A 0.0000
30 R A -2.9964
31 D A -2.8809
32 Y A -1.7650
33 A A -1.4442
34 M A 0.0000
35 T A 0.0000
36 W A 0.0000
37 V A 0.0000
38 R A 0.0000
39 Q A -0.9516
40 A A -1.2992
41 P A -0.9705
42 G A -1.4735
43 K A -2.4564
44 G A -1.6498
45 L A 0.0000
46 E A -1.4771
47 W A 0.0000
48 V A 0.0000
49 S A 0.0000
50 S A 0.0000
51 I A 0.0000
52 S A -1.4329
53 G A -1.9787
54 S A -1.5750
55 G A -1.3189
56 G A -1.2806
57 N A -1.5222
58 T A -0.5015
59 Y A 0.1137
60 Y A -0.1837
61 A A -0.6980
63 S A -1.0115
64 V A 0.0000
65 K A -1.9459
66 G A -1.6257
67 R A -1.7918
68 F A 0.0000
69 T A -0.8532
70 I A 0.0000
71 S A -0.6380
72 R A -1.1385
73 D A -1.6754
74 N A -2.2566
75 S A -2.1152
76 K A -2.5341
77 N A -2.0357
78 T A 0.0000
79 L A 0.0000
80 Y A -0.3874
81 L A 0.0000
82 Q A -1.2929
83 M A 0.0000
84 N A -1.9764
85 S A -1.5247
86 L A 0.0000
87 R A -2.5643
88 A A -1.8290
89 E A -2.2721
90 D A 0.0000
91 T A -0.8671
92 A A 0.0000
93 V A 0.2279
94 Y A 0.0000
95 Y A 0.0000
96 C A 0.0000
97 A A 0.0000
98 K A 0.0000
99 D A 0.0000
100 R A -2.2220
111 G A -1.0847
112 L A 0.0000
113 D A -1.3347
114 V A -0.6393
115 W A 0.0000
116 G A 0.0000
117 Q A -1.3408
118 G A -0.5846
119 T A -0.1750
120 T A -0.0645
121 V A 0.0000
122 T A -0.7548
123 V A 0.0000
124 S A -0.9712
125 S A -0.7253
126 A A -0.5611
127 S A -0.7234
128 T A -0.7921
129 K A -1.1856
130 G A -1.3115
131 P A -0.6304
132 S A -0.4517
133 V A 0.0000
134 F A 0.0000
135 P A -1.1968
136 L A 0.0000
137 A A -0.3116
138 P A -0.0443
139 C A 0.3920
145 E A -2.0099
146 S A -1.2504
147 T A -0.8019
148 A A -0.4918
149 A A 0.0000
150 L A 0.0000
151 G A 0.0000
152 C A 0.0000
153 L A 0.0000
154 V A 0.0000
155 K A 0.0000
156 D A -0.4806
157 Y A 0.0000
158 F A 0.0000
159 P A 0.0000
160 E A -0.6986
161 P A -0.6762
162 V A -0.6402
163 T A -0.5492
164 V A -0.2715
165 S A -0.4231
166 W A 0.0000
167 N A -1.0291
168 S A -0.7772
169 G A -0.5883
170 A A -0.2891
171 L A -0.1172
172 T A -0.1808
173 S A -0.1606
174 G A -0.1392
175 V A 0.2283
176 H A 0.0000
177 T A 0.0990
178 F A 0.0000
179 P A -0.2039
180 A A 0.2267
181 V A 0.5101
182 L A 1.3265
183 Q A 0.3387
184 S A -0.0062
185 S A -0.1692
186 G A 0.1330
187 L A 0.2129
188 Y A 0.4890
189 S A 0.0000
190 L A 0.0000
191 S A 0.0000
192 S A 0.0000
193 V A 0.0000
194 V A 0.0000
195 T A -0.0774
196 V A 0.0000
197 P A -0.6501
198 S A -0.6412
199 S A -0.6408
200 S A -0.4376
201 L A -0.3344
202 G A -0.7860
203 T A -0.7340
204 K A -1.4503
205 T A -1.3882
206 Y A 0.0000
207 T A -1.8144
208 C A 0.0000
209 N A 0.0000
210 V A 0.0000
211 D A -1.7688
212 H A 0.0000
213 K A -2.6347
214 P A -1.4738
215 S A -1.6769
216 N A -2.2944
217 T A -1.7959
218 K A -2.4945
219 V A -1.5547
220 D A -2.6076
221 K A -2.3906
222 R A -2.8901
223 V A 0.0000
224 E A -2.4525
1 D B -1.6878
2 I B 0.0000
3 V B 0.7723
4 M B 0.0000
5 T B -0.3031
6 Q B 0.0000
7 S B -0.2903
8 P B 0.0531
9 L B 0.6410
10 S B 0.1925
11 L B -0.0512
12 P B -0.6371
13 V B 0.0000
14 T B -1.8562
15 P B -2.4252
16 G B -2.6235
17 E B -3.1032
18 P B -2.6007
19 A B 0.0000
20 S B -0.9272
21 I B 0.0000
22 S B -0.8025
23 C B 0.0000
24 R B -1.4660
25 S B 0.0000
26 S B -0.8260
27 Q B -1.4155
28 S B -0.5941
29 L B 0.0000
30 L B 1.5966
31 Y B 2.0798
34 G B 0.5897
35 Y B 1.8470
36 N B 0.0000
37 Y B 1.0083
38 L B 0.0000
39 D B 0.0000
40 W B 0.0000
41 Y B 0.0000
42 L B 0.0000
43 Q B -0.9821
44 K B -1.7332
45 S B -1.4174
46 G B -1.6300
47 Q B -2.1880
48 S B -1.4841
49 P B 0.0000
50 Q B -1.5697
51 L B 0.0000
52 L B 0.0000
53 I B 0.0000
54 Y B -0.1916
55 L B 0.4908
56 G B 0.0000
57 S B -0.5893
58 N B -1.1545
59 R B -1.7342
60 A B -1.2351
61 S B -0.9312
62 G B -0.9733
63 V B 0.0000
64 P B -1.4085
65 D B -2.4153
66 R B -2.0285
67 F B 0.0000
68 S B -1.5172
69 G B 0.0000
70 S B -0.9087
71 G B -0.8772
72 S B -0.2661
73 G B -0.3847
74 T B -1.3055
75 D B -1.8585
76 F B 0.0000
77 T B -1.0535
78 L B 0.0000
79 K B -2.0140
80 I B 0.0000
81 S B -2.6192
82 R B -3.6819
83 V B 0.0000
84 E B -3.1461
85 A B -2.5408
86 E B -2.7401
87 D B 0.0000
88 V B 0.0000
89 G B -0.7759
90 F B 0.3501
91 Y B 0.0000
92 Y B 0.0000
93 C B 0.0000
94 M B 0.0000
95 Q B 0.0000
96 A B 0.0000
97 L B 0.1868
98 Q B -1.3252
99 T B -0.7329
100 P B -0.8100
101 Y B 0.0000
102 T B -0.4275
103 F B -0.1166
104 G B 0.0000
105 Q B -1.0467
106 G B 0.0000
107 T B 0.0000
108 K B -0.0858
109 L B 0.0000
110 E B -0.7536
111 I B 0.0000
112 K B -1.3093
113 R B -1.1171
114 T B -0.1070
115 V B 0.3829
116 A B 0.0139
117 A B -0.0947
118 P B 0.0000
119 S B -0.1172
120 V B 0.0000
121 F B 0.0638
122 I B 0.0923
123 F B 0.0000
124 P B -0.2678
125 P B 0.0000
126 S B -1.5664
127 D B -2.9573
128 E B -2.9817
129 Q B 0.0000
130 L B -2.2359
131 K B -2.8316
132 S B -1.7320
133 G B -1.2302
134 T B -1.2207
135 A B 0.0000
136 S B 0.0000
137 V B 0.0000
138 V B 0.0000
139 C B 0.0000
140 L B 0.0000
141 L B 0.0000
142 N B 0.0000
143 N B -0.7284
144 F B 0.0000
145 Y B 0.0000
146 P B -1.4193
147 R B -2.3467
148 E B -2.9532
149 A B -2.2166
150 K B -2.3839
151 V B -1.1551
152 Q B -0.5216
153 W B 0.0000
154 K B -0.4820
155 V B 0.0000
156 D B -1.8567
157 N B -1.4974
158 A B -0.2081
159 L B 0.8290
160 Q B -0.0184
161 S B -0.4418
162 G B -0.9187
163 N B -0.8784
164 S B -1.1624
165 Q B -1.4405
166 E B -1.9294
167 S B -0.8542
168 V B -0.3340
169 T B -0.5713
170 E B -1.4178
171 Q B 0.0000
172 D B -1.9637
173 S B -2.4879
174 K B -2.8917
175 D B -2.2217
176 S B 0.0000
177 T B 0.0000
178 Y B 0.0000
179 S B 0.0000
180 L B 0.0000
181 S B 0.0000
182 S B 0.0000
183 T B -0.6672
184 L B 0.0000
185 T B -0.4853
186 L B -0.7092
187 S B -1.0692
188 K B -2.0536
189 A B -1.8759
190 D B -2.6226
191 Y B 0.0000
192 E B -3.4196
193 K B -3.6031
194 H B -3.1633
195 K B -3.1305
196 V B -1.5409
197 Y B 0.0000
198 A B 0.0000
199 C B 0.0000
200 E B -0.8921
201 V B 0.0000
202 T B -1.2445
203 H B 0.0000
204 Q B -1.6761
205 G B -0.4264
206 L B -0.2297
207 S B -0.4596
208 S B -0.4354
209 P B -0.6051
210 V B -0.0985
211 T B -0.5049
212 K B -0.7395
213 S B -0.5303
214 F B 0.0000
215 N B -1.4345
216 R B -2.1033
217 G B -1.3690
2 V C 0.9814
3 Q C -0.1919
4 L C 0.0000
5 V C 0.6108
6 E C 0.0000
7 S C -0.5109
8 G C -0.9152
9 G C -0.7481
10 G C -0.7503
11 L C -0.4458
12 E C -1.3736
13 Q C -1.9914
14 P C -2.0033
15 G C -1.6460
16 G C -1.3491
17 S C -1.2055
18 L C -1.1114
19 R C -2.0373
20 L C 0.0000
21 S C -0.4126
22 C C 0.0000
23 A C -0.2767
24 G C 0.0000
25 S C 0.0052
26 G C -0.1435
27 F C -0.2676
28 T C -1.1360
29 F C 0.0000
30 R C -2.3576
31 D C -2.5753
32 Y C -1.7047
33 A C -1.0951
34 M C 0.0000
35 T C 0.0000
36 W C 0.0000
37 V C 0.0000
38 R C 0.0000
39 Q C -0.9435
40 A C -1.2856
41 P C -1.0309
42 G C -1.4690
43 K C -2.4664
44 G C -1.7039
45 L C 0.0000
46 E C -1.7374
47 W C -0.5321
48 V C 0.0000
49 S C -0.2597
50 S C 0.0926
51 I C 0.1709
52 S C -0.7326
53 G C -1.4041
54 S C -0.9065
63 S C -1.3109
64 V C 0.0000
65 K C -2.1013
66 G C -1.6145
67 R C -1.6845
68 F C 0.0000
69 T C -0.6202
70 I C 0.3302
71 S C -0.0995
72 R C -1.0271
73 D C -1.8316
74 N C -2.2949
75 S C -1.9181
76 K C -2.4567
77 N C -2.0346
78 T C 0.0000
79 L C 0.0000
80 Y C -0.4859
81 L C 0.0000
82 Q C -0.9959
83 M C 0.0000
84 N C -1.6281
85 S C -1.5215
86 L C 0.0000
87 R C -3.0051
88 A C -2.0570
89 E C -2.4570
90 D C 0.0000
91 T C -0.8866
92 A C 0.0000
93 V C 0.2525
94 Y C 0.0000
95 Y C 0.0000
96 C C 0.0000
97 A C 0.0000
98 K C 0.0000
99 D C -1.5844
100 R C -2.4551
112 L C 0.0000
113 D C -1.7999
114 V C -0.6460
115 W C 0.0000
116 G C 0.0000
117 Q C -1.2958
118 G C 0.0000
119 T C -0.1270
120 T C -0.0198
121 V C 0.0000
122 T C -0.7408
123 V C 0.0000
124 S C -1.1465
125 S C -0.7452
126 A C -0.5134
127 S C -0.6856
128 T C -0.7832
129 K C -1.1434
130 G C -1.3693
131 P C 0.0000
132 S C -0.4398
133 V C 0.0000
134 F C 0.0000
135 P C -1.2393
136 L C 0.0000
137 A C -0.5120
138 P C -0.6032
145 E C -2.0031
146 S C -1.2442
147 T C -0.7525
148 A C -0.4430
149 A C 0.0000
150 L C 0.0000
151 G C 0.0000
152 C C 0.0000
153 L C 0.0000
154 V C 0.0000
155 K C 0.0000
156 D C -0.3943
157 Y C 0.0000
158 F C -0.2013
159 P C 0.0000
160 E C -0.7046
161 P C -0.6728
162 V C -0.6530
163 T C -0.5811
164 V C -0.1702
165 S C -0.4881
166 W C 0.0000
167 N C -1.0585
168 S C -0.8123
169 G C -0.5911
170 A C -0.2615
171 L C -0.0879
172 T C -0.1776
173 S C -0.1852
174 G C -0.2242
175 V C 0.2114
176 H C 0.0000
177 T C 0.0388
178 F C 0.0000
179 P C -0.3808
180 A C 0.1917
181 V C 0.5537
182 L C 1.3001
183 Q C 0.3329
184 S C -0.0321
185 S C -0.2046
186 G C 0.1196
187 L C 0.2489
188 Y C 0.5267
189 S C 0.0000
190 L C 0.0000
191 S C 0.0000
192 S C 0.0000
193 V C 0.0000
194 V C 0.0000
195 T C -0.1032
196 V C 0.0000
197 P C -0.5398
198 S C -0.5408
199 S C -0.5534
200 S C 0.0000
201 L C -0.0694
202 G C -0.6338
203 T C -0.6840
204 K C -1.4655
205 T C -1.3672
206 Y C 0.0000
207 T C -1.9793
208 C C 0.0000
209 N C -1.6538
210 V C 0.0000
211 D C -1.9266
212 H C 0.0000
213 K C -2.7454
214 P C -1.5799
215 S C -1.7735
216 N C -2.5985
217 T C -2.0489
218 K C -2.6857
219 V C -1.6177
220 D C -2.6916
221 K C -2.4609
222 R C -2.9217
223 V C 0.0000
224 E C -2.4217
2 I D 0.9938
3 V D 1.4459
4 M D 0.0000
5 T D -0.5319
6 Q D 0.0000
7 S D -0.2619
8 P D 0.2413
9 L D 0.9733
10 S D 0.3095
11 L D 0.0381
12 P D -0.7710
13 V D 0.0000
14 T D -1.7498
15 P D -2.1964
16 G D -2.2741
17 E D -2.6675
18 P D -2.2842
19 A D 0.0000
20 S D -0.7082
21 I D 0.0000
22 S D -0.9520
23 C D 0.0000
24 R D -2.3116
25 S D -1.0979
26 S D -0.6984
27 Q D -0.9641
28 S D -0.6312
29 L D 0.3571
30 L D 1.3878
38 L D 0.2040
39 D D 0.0000
40 W D 0.0000
41 Y D 0.0000
42 L D 0.0000
43 Q D -0.9255
44 K D -1.6682
45 S D -1.4091
46 G D -1.6428
47 Q D -2.1110
48 S D -1.4213
49 P D 0.0000
50 Q D -1.6465
51 L D 0.0000
52 L D 0.0000
53 I D 0.0000
54 Y D -0.6879
56 G D -0.5571
57 S D -1.1684
58 N D -1.9826
59 R D -2.0555
60 A D -1.5763
61 S D -1.4554
62 G D -0.8864
63 V D -1.0076
64 P D -1.2442
65 D D -2.3200
66 R D -1.8796
67 F D 0.0000
68 S D -1.3488
69 G D -0.9722
70 S D -0.9401
71 G D -1.0908
73 G D -0.9896
74 T D -1.6177
75 D D -2.2564
76 F D 0.0000
77 T D -1.0627
78 L D 0.0000
79 K D -1.4860
80 I D 0.0000
81 S D -2.2302
82 R D -3.3595
83 V D 0.0000
84 E D -2.5944
85 A D -2.3584
86 E D -2.7245
87 D D 0.0000
88 V D 0.0000
89 G D 0.0000
90 F D 0.4102
91 Y D 0.0000
92 Y D 0.0000
93 C D 0.0000
94 M D 0.0000
95 Q D 0.0000
96 A D 0.0664
97 L D 0.3902
98 Q D -0.8646
99 T D -0.5686
100 P D -0.5322
101 Y D -0.0713
102 T D 0.0599
103 F D 0.0000
104 G D 0.0000
105 Q D -1.1235
106 G D 0.0000
107 T D 0.0000
108 K D 0.0864
109 L D 0.0000
110 E D -1.1851
111 I D 0.0000
112 K D -1.4580
113 R D -1.1441
114 T D -0.1476
115 V D 0.2921
116 A D -0.0656
117 A D -0.1445
118 P D 0.0000
119 S D -0.2013
120 V D 0.0000
121 F D -0.0602
122 I D 0.0000
123 F D 0.0000
124 P D -0.6895
125 P D 0.0000
126 S D 0.0000
127 D D -2.9863
128 E D -3.0791
129 Q D 0.0000
130 L D -2.2443
131 K D -2.8761
132 S D -1.7629
133 G D -1.2226
134 T D -0.9498
135 A D 0.0000
136 S D 0.0000
137 V D 0.0000
138 V D 0.0000
139 C D 0.0000
140 L D 0.0000
141 L D 0.0000
142 N D 0.0000
143 N D -0.7775
144 F D 0.0000
145 Y D 0.0000
146 P D -1.5734
147 R D -2.7190
148 E D -3.0917
149 A D -2.3486
150 K D -2.4931
151 V D 0.0000
152 Q D -0.6379
153 W D 0.0000
154 K D -0.6220
155 V D 0.0000
156 D D -1.9441
157 N D -1.5390
158 A D -0.2406
159 L D 0.7809
160 Q D -0.0549
161 S D -0.4348
162 G D -0.9012
163 N D -0.8334
164 S D -1.1829
165 Q D -1.4124
166 E D -1.9998
167 S D -1.0465
168 V D -0.7906
169 T D -1.0051
170 E D -2.0616
171 Q D 0.0000
172 D D -1.9263
173 S D -2.4279
174 K D -2.7047
175 D D -1.8455
176 S D 0.0000
177 T D 0.0000
178 Y D 0.0000
179 S D 0.0000
180 L D 0.0000
181 S D 0.0000
182 S D 0.0000
183 T D -0.6857
184 L D 0.0000
185 T D -0.3968
186 L D -0.5621
187 S D -0.8837
188 K D -1.8599
189 A D -1.6392
190 D D -2.2208
191 Y D 0.0000
192 E D -3.2878
193 K D -3.4838
194 H D -2.9960
195 K D -3.3023
196 V D -1.4708
197 Y D 0.0000
198 A D 0.0000
199 C D 0.0000
200 E D -0.8544
201 V D 0.0000
202 T D -1.2832
203 H D 0.0000
204 Q D -1.7287
205 G D -0.4450
206 L D -0.2512
207 S D -0.4518
208 S D -0.4536
209 P D -0.6286
210 V D -0.0728
211 T D -0.4815
212 K D -0.6437
213 S D -0.7187
214 F D -0.9598
215 N D -1.9352
216 R D -2.7455
217 G D -2.3084
218 E D -2.5566
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018