Project name: query_structure

Status: done

Started: 2026-03-16 19:58:36
Settings
Chain sequence(s) A: CHSTGEFRCRSSGICVSPTWVCDGENDCLDGSDEASCTAAGPT
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:11)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:11)
Show buried residues

Minimal score value
-3.2283
Maximal score value
0.3397
Average score
-0.8466
Total score value
-36.4038

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 C A -0.1496
2 H A -0.8546
3 S A -0.7238
4 T A -0.5595
5 G A -0.9430
6 E A -0.7862
7 F A -0.6449
8 R A -1.7710
9 C A 0.0000
10 R A -2.4375
11 S A -1.5365
12 S A -0.7578
13 G A -0.8721
14 I A 0.3397
15 C A -0.3101
16 V A 0.0000
17 S A -0.0763
18 P A -0.4547
19 T A -0.1111
20 W A -0.4753
21 V A -0.7607
22 C A -1.2849
23 D A -2.5718
24 G A -2.5126
25 E A -3.2283
26 N A -2.7572
27 D A -1.6156
28 C A 0.0000
29 L A 0.0156
30 D A -1.9019
31 G A -1.7740
32 S A 0.0000
33 D A 0.0000
34 E A -1.5837
35 A A -0.6796
36 S A -0.1142
37 C A -0.2442
38 T A -0.0692
39 A A -0.0524
40 A A -0.1654
41 G A -0.9391
42 P A -0.7376
43 T A -0.3027
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018