Project name: query_structure

Status: done

Started: 2026-03-17 00:57:10
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Chain sequence(s) A: QVQLVESGGGSVQAGGSLRLSCTYSVYTYSSDSMAWFRQAPGKEREGVAGIYIGSGSTLYADSAKGRLTISQDKAKNTVYLQMNSLKPEDTALYYCAAGGNWYDGVLNVERAFAYWGQGTQVTVSS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:14)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:15)
Show buried residues

Minimal score value
-3.5036
Maximal score value
1.5875
Average score
-0.7881
Total score value
-99.298

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.0916
2 V A -0.3787
3 Q A -0.7142
4 L A 0.0000
5 V A 1.0792
6 E A 0.0052
7 S A -0.5231
8 G A -1.2300
9 G A -1.2073
10 G A -0.9161
11 S A -0.7038
12 V A -0.7334
13 Q A -1.5601
14 A A -1.6162
15 G A -1.3830
16 G A -1.1629
17 S A -1.4629
18 L A -1.3445
19 R A -2.3159
20 L A 0.0000
21 S A -0.4330
22 C A 0.0000
23 T A -0.1784
24 Y A 0.0000
25 S A 0.2580
26 V A 1.5875
27 Y A 0.9922
28 T A 1.0061
29 Y A 1.2318
30 S A 0.1232
31 S A -0.3398
32 D A -0.3663
33 S A 0.0000
34 M A 0.0000
35 A A 0.0000
36 W A 0.0000
37 F A 0.0000
38 R A -1.4137
39 Q A -2.1107
40 A A -2.0092
41 P A -1.4309
42 G A -1.9571
43 K A -3.3144
44 E A -3.5036
45 R A -3.1876
46 E A -2.3806
47 G A 0.0000
48 V A 0.0000
49 A A 0.0000
50 G A 0.0000
51 I A 0.0000
52 Y A -0.4346
53 I A 0.0000
54 G A -0.6626
55 S A -0.5873
56 G A -0.4695
57 S A -0.2755
58 T A 0.0307
59 L A 0.0601
60 Y A -0.5906
61 A A -1.4113
62 D A -2.3182
63 S A -1.6013
64 A A 0.0000
65 K A -2.5769
66 G A -1.8960
67 R A -1.7917
68 L A 0.0000
69 T A -1.0221
70 I A 0.0000
71 S A -0.5811
72 Q A -1.1960
73 D A -1.9445
74 K A -2.6877
75 A A -1.8722
76 K A -2.5970
77 N A -1.6973
78 T A 0.0000
79 V A 0.0000
80 Y A -0.6590
81 L A 0.0000
82 Q A -1.6620
83 M A 0.0000
84 N A -2.0635
85 S A -1.4370
86 L A 0.0000
87 K A -2.1916
88 P A -1.7491
89 E A -2.2138
90 D A 0.0000
91 T A -1.1260
92 A A 0.0000
93 L A -0.6817
94 Y A 0.0000
95 Y A 0.0000
96 C A 0.0000
97 A A 0.0000
98 A A 0.0000
99 G A 0.0000
100 G A -1.0379
101 N A -1.1894
102 W A 0.0000
103 Y A -0.0119
104 D A -1.3784
105 G A -0.8766
106 V A -0.4714
107 L A 0.0000
108 N A -1.9527
109 V A -1.9195
110 E A -3.1094
111 R A -2.8289
112 A A -1.6931
113 F A 0.0000
114 A A -0.2738
115 Y A 0.1808
116 W A 0.1063
117 G A -0.1512
118 Q A -1.0601
119 G A -0.6802
120 T A 0.0000
121 Q A -1.5102
122 V A 0.0000
123 T A -0.9384
124 V A 0.0000
125 S A -1.0994
126 S A -0.8105
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Laboratory of Theory of Biopolymers 2018