| Chain sequence(s) |
A: QVQLVESGGGSVQAGGSLRLSCTYSVYTYSSDSMAWFRQAPGKEREGVAGIYIGSGSTLYADSAKGRLTISQDKAKNTVYLQMNSLKPEDTALYYCAAGGNWYDGVLNVERAFAYWGQGTQVTVSS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:14)
[INFO] Main: Simulation completed successfully. (00:01:15)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | A | -1.0916 | |
| 2 | V | A | -0.3787 | |
| 3 | Q | A | -0.7142 | |
| 4 | L | A | 0.0000 | |
| 5 | V | A | 1.0792 | |
| 6 | E | A | 0.0052 | |
| 7 | S | A | -0.5231 | |
| 8 | G | A | -1.2300 | |
| 9 | G | A | -1.2073 | |
| 10 | G | A | -0.9161 | |
| 11 | S | A | -0.7038 | |
| 12 | V | A | -0.7334 | |
| 13 | Q | A | -1.5601 | |
| 14 | A | A | -1.6162 | |
| 15 | G | A | -1.3830 | |
| 16 | G | A | -1.1629 | |
| 17 | S | A | -1.4629 | |
| 18 | L | A | -1.3445 | |
| 19 | R | A | -2.3159 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.4330 | |
| 22 | C | A | 0.0000 | |
| 23 | T | A | -0.1784 | |
| 24 | Y | A | 0.0000 | |
| 25 | S | A | 0.2580 | |
| 26 | V | A | 1.5875 | |
| 27 | Y | A | 0.9922 | |
| 28 | T | A | 1.0061 | |
| 29 | Y | A | 1.2318 | |
| 30 | S | A | 0.1232 | |
| 31 | S | A | -0.3398 | |
| 32 | D | A | -0.3663 | |
| 33 | S | A | 0.0000 | |
| 34 | M | A | 0.0000 | |
| 35 | A | A | 0.0000 | |
| 36 | W | A | 0.0000 | |
| 37 | F | A | 0.0000 | |
| 38 | R | A | -1.4137 | |
| 39 | Q | A | -2.1107 | |
| 40 | A | A | -2.0092 | |
| 41 | P | A | -1.4309 | |
| 42 | G | A | -1.9571 | |
| 43 | K | A | -3.3144 | |
| 44 | E | A | -3.5036 | |
| 45 | R | A | -3.1876 | |
| 46 | E | A | -2.3806 | |
| 47 | G | A | 0.0000 | |
| 48 | V | A | 0.0000 | |
| 49 | A | A | 0.0000 | |
| 50 | G | A | 0.0000 | |
| 51 | I | A | 0.0000 | |
| 52 | Y | A | -0.4346 | |
| 53 | I | A | 0.0000 | |
| 54 | G | A | -0.6626 | |
| 55 | S | A | -0.5873 | |
| 56 | G | A | -0.4695 | |
| 57 | S | A | -0.2755 | |
| 58 | T | A | 0.0307 | |
| 59 | L | A | 0.0601 | |
| 60 | Y | A | -0.5906 | |
| 61 | A | A | -1.4113 | |
| 62 | D | A | -2.3182 | |
| 63 | S | A | -1.6013 | |
| 64 | A | A | 0.0000 | |
| 65 | K | A | -2.5769 | |
| 66 | G | A | -1.8960 | |
| 67 | R | A | -1.7917 | |
| 68 | L | A | 0.0000 | |
| 69 | T | A | -1.0221 | |
| 70 | I | A | 0.0000 | |
| 71 | S | A | -0.5811 | |
| 72 | Q | A | -1.1960 | |
| 73 | D | A | -1.9445 | |
| 74 | K | A | -2.6877 | |
| 75 | A | A | -1.8722 | |
| 76 | K | A | -2.5970 | |
| 77 | N | A | -1.6973 | |
| 78 | T | A | 0.0000 | |
| 79 | V | A | 0.0000 | |
| 80 | Y | A | -0.6590 | |
| 81 | L | A | 0.0000 | |
| 82 | Q | A | -1.6620 | |
| 83 | M | A | 0.0000 | |
| 84 | N | A | -2.0635 | |
| 85 | S | A | -1.4370 | |
| 86 | L | A | 0.0000 | |
| 87 | K | A | -2.1916 | |
| 88 | P | A | -1.7491 | |
| 89 | E | A | -2.2138 | |
| 90 | D | A | 0.0000 | |
| 91 | T | A | -1.1260 | |
| 92 | A | A | 0.0000 | |
| 93 | L | A | -0.6817 | |
| 94 | Y | A | 0.0000 | |
| 95 | Y | A | 0.0000 | |
| 96 | C | A | 0.0000 | |
| 97 | A | A | 0.0000 | |
| 98 | A | A | 0.0000 | |
| 99 | G | A | 0.0000 | |
| 100 | G | A | -1.0379 | |
| 101 | N | A | -1.1894 | |
| 102 | W | A | 0.0000 | |
| 103 | Y | A | -0.0119 | |
| 104 | D | A | -1.3784 | |
| 105 | G | A | -0.8766 | |
| 106 | V | A | -0.4714 | |
| 107 | L | A | 0.0000 | |
| 108 | N | A | -1.9527 | |
| 109 | V | A | -1.9195 | |
| 110 | E | A | -3.1094 | |
| 111 | R | A | -2.8289 | |
| 112 | A | A | -1.6931 | |
| 113 | F | A | 0.0000 | |
| 114 | A | A | -0.2738 | |
| 115 | Y | A | 0.1808 | |
| 116 | W | A | 0.1063 | |
| 117 | G | A | -0.1512 | |
| 118 | Q | A | -1.0601 | |
| 119 | G | A | -0.6802 | |
| 120 | T | A | 0.0000 | |
| 121 | Q | A | -1.5102 | |
| 122 | V | A | 0.0000 | |
| 123 | T | A | -0.9384 | |
| 124 | V | A | 0.0000 | |
| 125 | S | A | -1.0994 | |
| 126 | S | A | -0.8105 |