| Chain sequence(s) |
A: FFGHKFG
C: FFGHKFG B: FFGHKFG D: FFGHKFG input PDB |
| Selected Chain(s) | A,C,B,D |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:03:57)
[INFO] Main: Simulation completed successfully. (00:03:59)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | F | A | 4.7020 | |
| 2 | F | A | 4.3971 | |
| 3 | G | A | 3.3818 | |
| 4 | H | A | 1.9972 | |
| 5 | K | A | 1.4047 | |
| 6 | F | A | 1.9026 | |
| 7 | G | A | 0.4046 | |
| 1 | F | B | 4.1408 | |
| 2 | F | B | 4.3352 | |
| 3 | G | B | 3.9089 | |
| 4 | H | B | 2.5016 | |
| 5 | K | B | 0.3162 | |
| 6 | F | B | 1.5902 | |
| 7 | G | B | 0.1565 | |
| 1 | F | C | 2.7836 | |
| 2 | F | C | 4.1033 | |
| 3 | G | C | 0.0000 | |
| 4 | H | C | 2.9209 | |
| 5 | K | C | 2.0156 | |
| 6 | F | C | 2.8664 | |
| 7 | G | C | 1.8647 | |
| 1 | F | D | 2.3974 | |
| 2 | F | D | 3.7636 | |
| 3 | G | D | 3.3057 | |
| 4 | H | D | 2.5054 | |
| 5 | K | D | 2.1069 | |
| 6 | F | D | 2.1509 | |
| 7 | G | D | 0.6991 |