Project name: Nb_Hybrid

Status: done

Started: 2025-07-27 21:54:45
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Chain sequence(s) A: QVQLVESGGGLVQPGGSLRLSCAASGRTFSPYTWFRQAPGQGLEAVAIIGSDRSTDLDGDTRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAALTAKGYVFTDNEYDYWGQGTLVTVSS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:40)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:40)
Show buried residues

Minimal score value
-2.9894
Maximal score value
1.5955
Average score
-0.7135
Total score value
-84.9022

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.7994
2 V A -1.6834
3 Q A -1.3534
4 L A 0.0000
5 V A 1.1290
6 E A 0.3914
7 S A -0.1712
8 G A -0.7063
9 G A 0.1788
10 G A 0.8575
11 L A 1.4118
12 V A -0.1077
13 Q A -1.3995
14 P A -1.7064
15 G A -1.4966
16 G A -1.0437
17 S A -1.2416
18 L A -0.7528
19 R A -1.7713
20 L A 0.0000
21 S A -0.3428
22 C A 0.0000
23 A A -0.1031
24 A A 0.0000
25 S A -1.4708
26 G A -1.9695
27 R A -2.3997
28 T A -1.5041
29 F A 0.0000
30 S A -1.0266
31 P A 0.0000
32 Y A 0.0000
33 T A 0.0000
34 W A 0.0000
35 F A 0.0000
36 R A -0.6070
37 Q A -0.9802
38 A A -1.1532
39 P A -1.1874
40 G A -1.3005
41 Q A -1.9506
42 G A -1.4292
43 L A -0.9500
44 E A -1.4573
45 A A -0.6615
46 V A 0.0000
47 A A 0.0000
48 I A 0.0000
49 I A 0.0000
50 G A 0.0000
51 S A -2.0003
52 D A -2.9345
53 R A -2.9894
54 S A -1.7334
55 T A -1.1793
56 D A -1.4971
57 L A -1.3073
58 D A -2.3436
59 G A -1.6176
60 D A -1.2060
61 T A -0.7793
62 R A -0.6972
63 F A 0.0000
64 T A -0.5778
65 I A 0.0000
66 S A -0.8237
67 R A -1.5058
68 D A -1.8748
69 N A -2.3259
70 S A -1.8870
71 K A -2.5106
72 N A -2.1092
73 T A 0.0000
74 L A 0.0000
75 Y A -0.5441
76 L A 0.0000
77 Q A -1.0337
78 M A 0.0000
79 N A -1.3651
80 S A -1.2568
81 L A 0.0000
82 R A -2.5372
83 A A -1.8278
84 E A -2.3319
85 D A 0.0000
86 T A -0.4566
87 A A 0.0000
88 V A 0.7829
89 Y A 0.0000
90 Y A 0.2358
91 C A 0.0000
92 A A 0.0000
93 A A 0.0000
94 L A 0.0000
95 T A -1.0027
96 A A -0.8693
97 K A -1.7066
98 G A -0.1496
99 Y A 1.2732
100 V A 0.9058
101 F A 1.5955
102 T A -0.2037
103 D A -1.6156
104 N A -2.4500
105 E A -2.6601
106 Y A 0.0000
107 D A -2.0572
108 Y A -0.6399
109 W A -0.0192
110 G A -0.0455
111 Q A -0.6960
112 G A 0.0882
113 T A 0.6048
114 L A 1.5852
115 V A 0.0000
116 T A 0.3639
117 V A 0.0000
118 S A -0.6785
119 S A -0.5323
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Laboratory of Theory of Biopolymers 2018