Project name: query_structure

Status: done

Started: 2026-03-16 20:32:26
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Chain sequence(s) A: LPAPKNLVVSRVTEDSARLSWPLFASDLNIFDSFLIQYQESEKVGEAIVLTVPGSERSYDLTGLKPGTEYTVSIYGVGRHYTVYDSNPLSAIFTT
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:57)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:57)
Show buried residues

Minimal score value
-3.0628
Maximal score value
1.8473
Average score
-0.5556
Total score value
-52.7776

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 L A 1.3996
2 P A 0.2676
3 A A -0.5064
4 P A -1.1437
5 K A -2.2262
6 N A -1.4788
7 L A 0.0000
8 V A 1.2540
9 V A 0.7305
10 S A -0.5961
11 R A -1.9867
12 V A -0.9837
13 T A -1.7764
14 E A -3.0628
15 D A -2.7626
16 S A -2.0746
17 A A 0.0000
18 R A -1.1155
19 L A 0.0000
20 S A -0.0891
21 W A 0.0000
22 P A 0.3796
23 L A 1.8213
24 F A 1.4926
25 A A 0.9289
26 S A 0.5229
27 D A 0.7191
28 L A 1.3733
29 N A -0.6121
30 I A -0.2092
31 F A -0.6602
32 D A -2.2667
33 S A -0.9379
34 F A 0.0000
35 L A 0.6854
36 I A 0.0000
37 Q A 0.5071
38 Y A 0.4534
39 Q A -0.8219
40 E A -1.8418
41 S A -1.5926
42 E A -2.4392
43 K A -1.9459
44 V A 0.0267
45 G A -0.9380
46 E A -1.5502
47 A A -0.2067
48 I A 1.1632
49 V A 1.8179
50 L A 1.2779
51 T A 0.3742
52 V A 0.0000
53 P A -1.1419
54 G A -1.1909
55 S A -1.2181
56 E A -1.4104
57 R A -0.8234
58 S A -0.6650
59 Y A -0.6989
60 D A -1.5648
61 L A 0.0000
62 T A -1.3482
63 G A -1.5146
64 L A 0.0000
65 K A -3.0486
66 P A -2.5977
67 G A -1.8659
68 T A -2.2975
69 E A -1.9679
70 Y A 0.0000
71 T A -0.0020
72 V A 0.0000
73 S A -0.0100
74 I A 0.0000
75 Y A -0.2315
76 G A 0.0000
77 V A 0.0000
78 G A 0.0000
79 R A -2.2795
80 H A -1.3492
81 Y A 0.2474
82 T A 0.0372
83 V A 0.5405
84 Y A 0.0099
85 D A -1.8011
86 S A -1.4205
87 N A -2.0438
88 P A -1.3809
89 L A -0.9746
90 S A -0.0949
91 A A 0.9494
92 I A 1.8473
93 F A 0.0000
94 T A -0.8644
95 T A -1.9733
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Laboratory of Theory of Biopolymers 2018