Project name: Ublituximab

Status: done

Started: 2026-03-22 13:07:10
Settings
Chain sequence(s) H: QAYLQQSGAELVRPGASVKMSCKASGYTFTSYNMHWVKQTPRQGLEWIGGIYPGNGDTSYNQKFKGKATLTVGKSSSTAYMQLSSLTSEDSAVYFCARYDYNYAMDYWGQGTSVTVSS
L: QIVLSQSPAILSASPGEKVTMTCRASSSVSYMHWYQQKPGSSPKPWIYATSNLASGVPARFSGSGSGTSYSFTISRVEAEDAATYYCQQWTFNPPTFGGGTRLEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:38)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:40)
Show buried residues

Minimal score value
-3.8655
Maximal score value
1.3602
Average score
-0.4994
Total score value
-111.8591

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -0.9733
2 A H -0.2120
3 Y H 0.4101
4 L H 0.0000
5 Q H -1.4386
6 Q H 0.0000
7 S H -0.9540
8 G H -0.8213
9 A H 0.1061
11 E H 0.1688
12 L H 1.1147
13 V H -0.1140
14 R H -1.7842
15 P H -1.3088
16 G H -1.1521
17 A H -0.8540
18 S H -0.8851
19 V H -0.6249
20 K H -1.3621
21 M H 0.0000
22 S H -0.7297
23 C H 0.0000
24 K H -1.0628
25 A H 0.0000
26 S H -0.5191
27 G H -0.5319
28 Y H -0.0852
29 T H -0.1935
30 F H 0.0000
35 T H -0.4521
36 S H 0.0103
37 Y H 0.3250
38 N H -0.1142
39 M H 0.0000
40 H H 0.0000
41 W H 0.0000
42 V H 0.0000
43 K H 0.0000
44 Q H -0.5526
45 T H 0.0000
46 P H -1.3281
47 R H -2.3021
48 Q H -1.6710
49 G H -1.1511
50 L H 0.0000
51 E H -0.6663
52 W H 0.0000
53 I H 0.0000
54 G H 0.0000
55 G H 0.0000
56 I H 0.0000
57 Y H -0.5373
58 P H 0.0000
59 G H -1.1152
62 N H -1.8894
63 G H -1.6107
64 D H -2.1364
65 T H -1.0144
66 S H -0.8549
67 Y H -1.0846
68 N H 0.0000
69 Q H -2.6989
70 K H -2.8387
71 F H 0.0000
72 K H -2.8133
74 G H -1.8701
75 K H -1.6298
76 A H 0.0000
77 T H -0.7922
78 L H 0.0000
79 T H -0.3353
80 V H -0.4687
81 G H -0.6251
82 K H -1.2476
83 S H -0.7169
84 S H -0.6880
85 S H -0.7968
86 T H 0.0000
87 A H 0.0000
88 Y H -0.2280
89 M H 0.0000
90 Q H -1.0674
91 L H 0.0000
92 S H -0.7721
93 S H -0.8330
94 L H 0.0000
95 T H -1.0443
96 S H -1.1004
97 E H -1.1533
98 D H 0.0000
99 S H -0.2390
100 A H 0.0000
101 V H 0.2872
102 Y H 0.0000
103 F H 0.0000
104 C H 0.0000
105 A H 0.0000
106 R H 0.0679
107 Y H 0.2081
108 D H 0.2326
109 Y H 0.7805
110 N H -0.3172
113 Y H 0.3321
114 A H 0.0000
115 M H 0.0000
116 D H -0.3100
117 Y H 0.1609
118 W H -0.0833
119 G H 0.0000
120 Q H -1.0648
121 G H -0.6920
122 T H 0.0000
123 S H 0.0414
124 V H 0.0000
125 T H 0.0409
126 V H 0.0000
127 S H -0.6502
128 S H -0.8202
1 Q L -0.8925
2 I L 0.0000
3 V L 0.9458
4 L L 0.0000
5 S L -0.6688
6 Q L -0.5406
7 S L -0.4026
8 P L 0.2144
9 A L 0.5424
10 I L 1.3602
11 L L 0.3191
12 S L -0.7517
13 A L 0.0000
14 S L -2.2555
15 P L -2.2940
16 G L -2.7782
17 E L -3.7677
18 K L -3.6808
19 V L 0.0000
20 T L -0.4770
21 M L 0.0000
22 T L -0.7148
23 C L 0.0000
24 R L -1.9023
25 A L 0.0000
26 S L -0.3537
27 S L -0.2994
28 S L -0.4315
29 V L 0.0000
37 S L 0.2293
38 Y L 0.6270
39 M L 0.0000
40 H L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L 0.0000
44 Q L -0.7941
45 K L -1.0236
46 P L -0.7370
47 G L -0.8709
48 S L -0.8711
49 S L -0.6464
50 P L 0.0000
51 K L -0.8212
52 P L -0.4062
53 W L 0.0000
54 I L 0.0000
55 Y L 0.2048
56 A L 0.0000
57 T L 0.0000
65 S L -0.3120
66 N L -0.4545
67 L L 0.0476
68 A L -0.2641
69 S L -0.4613
70 G L -0.5100
71 V L 0.0000
72 P L -0.2563
74 A L -0.1725
75 R L -1.3154
76 F L 0.0000
77 S L -0.4013
78 G L -0.3738
79 S L -0.5075
80 G L -0.7752
83 S L -0.6555
84 G L -0.6459
85 T L -0.9388
86 S L -1.1320
87 Y L 0.0000
88 S L -0.6234
89 F L 0.0000
90 T L -0.7951
91 I L 0.0000
92 S L -2.4678
93 R L -3.8655
94 V L 0.0000
95 E L -2.8242
96 A L -1.3997
97 E L -1.1962
98 D L 0.0000
99 A L -1.0522
100 A L 0.0000
101 T L -0.5599
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 Q L 0.0000
106 Q L 0.0000
107 W L 0.4650
108 T L 0.5678
109 F L 0.4763
114 N L -0.8484
115 P L -0.8923
116 P L 0.0000
117 T L 0.0516
118 F L 0.0000
119 G L 0.0000
120 G L -0.8000
121 G L -0.3524
122 T L 0.0000
123 R L -0.6458
124 L L 0.0000
125 E L -1.2472
126 I L -1.2710
127 K L -1.8146
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Laboratory of Theory of Biopolymers 2018