Project name: 4CHR

Status: done

Started: 2026-03-30 05:49:20
Settings
Chain sequence(s) H: QVQLVQSGAEVKKPGASVKVSCKASGYTFTSYGINWVRQAPGQGLEWMGWISVYSGNTNYAQKVQGRVTMTADTSTSTAYMDLRSLRSDDTAVYYCAREGSSSSGDYYYGMDVWGQGTTVTVSS
L: DIVMTQTPLSLSVTPGQPASISCKSSQSLLHTDGTTYLYWYLQKPGQPPQLLIYEVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDVGIYYCMQNIQLPWTFGQGTKLEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:16)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:17)
Show buried residues

Minimal score value
-2.9722
Maximal score value
1.1655
Average score
-0.5273
Total score value
-124.4314

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.1132
2 V H -0.1715
3 Q H -0.5341
4 L H 0.0000
5 V H 0.1789
6 Q H 0.0000
7 S H -0.6208
8 G H -0.6311
9 A H -0.0291
11 E H 0.0062
12 V H 0.9582
13 K H -0.8683
14 K H -2.1224
15 P H -2.2327
16 G H -1.6705
17 A H -1.3695
18 S H -1.5422
19 V H 0.0000
20 K H -1.9785
21 V H 0.0000
22 S H -0.5127
23 C H 0.0000
24 K H -0.5044
25 A H 0.0000
26 S H -0.4617
27 G H -0.6358
28 Y H -0.1545
29 T H -0.0430
30 F H 0.0000
35 T H 0.3224
36 S H 0.1762
37 Y H 0.3241
38 G H 0.0000
39 I H 0.0000
40 N H 0.0000
41 W H 0.0000
42 V H 0.0000
43 R H 0.0000
44 Q H -0.6697
45 A H -1.0625
46 P H -1.0502
47 G H -1.2167
48 Q H -1.8055
49 G H -1.1840
50 L H 0.0000
51 E H -0.8838
52 W H 0.0000
53 M H 0.0000
54 G H 0.0000
55 W H -0.0568
56 I H 0.0000
57 S H -0.2704
58 V H 0.0000
59 Y H 0.8611
62 S H -0.2305
63 G H -0.8704
64 N H -1.4430
65 T H -0.8775
66 N H -0.5985
67 Y H -0.6595
68 A H 0.0000
69 Q H -2.4948
70 K H -2.5079
71 V H 0.0000
72 Q H -2.3458
74 G H -1.5960
75 R H -1.5204
76 V H 0.0000
77 T H -0.7591
78 M H 0.0000
79 T H -0.3576
80 A H -0.2469
81 D H -0.6368
82 T H -0.2376
83 S H -0.4172
84 T H -0.4541
85 S H -0.4781
86 T H 0.0000
87 A H 0.0000
88 Y H -0.4593
89 M H 0.0000
90 D H -1.2559
91 L H 0.0000
92 R H -1.5903
93 S H -1.4143
94 L H 0.0000
95 R H -2.9722
96 S H -2.3107
97 D H -2.4977
98 D H 0.0000
99 T H -0.8977
100 A H 0.0000
101 V H 0.0078
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 A H 0.0000
106 R H 0.0000
107 E H -0.0196
108 G H 0.0000
109 S H -0.1656
110 S H -0.4257
111 S H -0.6910
111A S H -1.0249
111B G H -1.2372
112B D H -1.7355
112A Y H -0.2361
112 Y H 0.1832
113 Y H 0.4772
114 G H 0.0000
115 M H 0.0000
116 D H 0.0000
117 V H 0.1559
118 W H -0.0423
119 G H 0.0000
120 Q H -1.2299
121 G H -0.6171
122 T H 0.0000
123 T H -0.0267
124 V H 0.0000
125 T H -0.2977
126 V H 0.0000
127 S H -1.0783
128 S H -0.8370
1 D L -1.4165
2 I L 0.0000
3 V L 0.9565
4 M L 0.0000
5 T L -0.1111
6 Q L 0.0000
7 T L 0.1127
8 P L 0.3916
9 L L 1.1655
10 S L 0.2933
11 L L 0.2060
12 S L -0.6486
13 V L 0.0000
14 T L -1.5536
15 P L -1.7560
16 G L -1.9260
17 Q L -2.1314
18 P L -1.6925
19 A L 0.0000
20 S L -0.6921
21 I L 0.0000
22 S L -0.7037
23 C L 0.0000
24 K L -1.5027
25 S L 0.0000
26 S L -0.5597
27 Q L -0.8946
28 S L -0.5748
29 L L 0.0000
30 L L 0.3094
31 H L -0.6555
32 T L -1.0282
34 D L -2.0238
35 G L -1.1992
36 T L -0.4415
37 T L -0.0915
38 Y L 0.3122
39 L L 0.0000
40 Y L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 L L 0.0000
44 Q L -0.6139
45 K L -1.0540
46 P L -0.7765
47 G L -1.1616
48 Q L -1.7187
49 P L -1.1149
50 P L 0.0000
51 Q L -0.5351
52 L L 0.0000
53 L L 0.0000
54 I L 0.0000
55 Y L -0.1206
56 E L -0.1303
57 V L 0.0000
65 S L -0.8282
66 N L -0.9724
67 R L -1.5498
68 F L -0.4963
69 S L -0.5724
70 G L -0.8679
71 V L 0.0000
72 P L -1.2126
74 D L -2.1891
75 R L 0.0000
76 F L 0.0000
77 S L -1.2582
78 G L -0.8828
79 S L -0.9251
80 G L -1.2758
83 S L -0.9168
84 G L -0.7571
85 T L -1.4014
86 D L -2.4724
87 F L 0.0000
88 T L -1.0368
89 L L 0.0000
90 K L -1.3445
91 I L 0.0000
92 S L -1.7933
93 R L -2.4721
94 V L 0.0000
95 E L -2.6666
96 A L -1.7490
97 E L -2.1337
98 D L 0.0000
99 V L -0.5881
100 G L 0.0000
101 I L 0.1463
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 M L 0.0000
106 Q L 0.0000
107 N L 0.0000
108 I L 0.4508
109 Q L -0.1231
114 L L 0.4799
115 P L -0.2871
116 W L 0.0000
117 T L 0.1043
118 F L 0.1229
119 G L 0.0000
120 Q L -0.6535
121 G L 0.0000
122 T L 0.0000
123 K L -0.3072
124 L L 0.0000
125 E L -0.7945
126 I L -0.8853
127 K L -1.7023
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Laboratory of Theory of Biopolymers 2018