| Chain sequence(s) |
H: QVQLVQSGAEVKKPGASVKVSCKASGYTFTSYGINWVRQAPGQGLEWMGWISVYSGNTNYAQKVQGRVTMTADTSTSTAYMDLRSLRSDDTAVYYCAREGSSSSGDYYYGMDVWGQGTTVTVSS
L: DIVMTQTPLSLSVTPGQPASISCKSSQSLLHTDGTTYLYWYLQKPGQPPQLLIYEVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDVGIYYCMQNIQLPWTFGQGTKLEIK input PDB |
| Selected Chain(s) | H,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:16)
[INFO] Main: Simulation completed successfully. (00:01:17)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | H | -1.1132 | |
| 2 | V | H | -0.1715 | |
| 3 | Q | H | -0.5341 | |
| 4 | L | H | 0.0000 | |
| 5 | V | H | 0.1789 | |
| 6 | Q | H | 0.0000 | |
| 7 | S | H | -0.6208 | |
| 8 | G | H | -0.6311 | |
| 9 | A | H | -0.0291 | |
| 11 | E | H | 0.0062 | |
| 12 | V | H | 0.9582 | |
| 13 | K | H | -0.8683 | |
| 14 | K | H | -2.1224 | |
| 15 | P | H | -2.2327 | |
| 16 | G | H | -1.6705 | |
| 17 | A | H | -1.3695 | |
| 18 | S | H | -1.5422 | |
| 19 | V | H | 0.0000 | |
| 20 | K | H | -1.9785 | |
| 21 | V | H | 0.0000 | |
| 22 | S | H | -0.5127 | |
| 23 | C | H | 0.0000 | |
| 24 | K | H | -0.5044 | |
| 25 | A | H | 0.0000 | |
| 26 | S | H | -0.4617 | |
| 27 | G | H | -0.6358 | |
| 28 | Y | H | -0.1545 | |
| 29 | T | H | -0.0430 | |
| 30 | F | H | 0.0000 | |
| 35 | T | H | 0.3224 | |
| 36 | S | H | 0.1762 | |
| 37 | Y | H | 0.3241 | |
| 38 | G | H | 0.0000 | |
| 39 | I | H | 0.0000 | |
| 40 | N | H | 0.0000 | |
| 41 | W | H | 0.0000 | |
| 42 | V | H | 0.0000 | |
| 43 | R | H | 0.0000 | |
| 44 | Q | H | -0.6697 | |
| 45 | A | H | -1.0625 | |
| 46 | P | H | -1.0502 | |
| 47 | G | H | -1.2167 | |
| 48 | Q | H | -1.8055 | |
| 49 | G | H | -1.1840 | |
| 50 | L | H | 0.0000 | |
| 51 | E | H | -0.8838 | |
| 52 | W | H | 0.0000 | |
| 53 | M | H | 0.0000 | |
| 54 | G | H | 0.0000 | |
| 55 | W | H | -0.0568 | |
| 56 | I | H | 0.0000 | |
| 57 | S | H | -0.2704 | |
| 58 | V | H | 0.0000 | |
| 59 | Y | H | 0.8611 | |
| 62 | S | H | -0.2305 | |
| 63 | G | H | -0.8704 | |
| 64 | N | H | -1.4430 | |
| 65 | T | H | -0.8775 | |
| 66 | N | H | -0.5985 | |
| 67 | Y | H | -0.6595 | |
| 68 | A | H | 0.0000 | |
| 69 | Q | H | -2.4948 | |
| 70 | K | H | -2.5079 | |
| 71 | V | H | 0.0000 | |
| 72 | Q | H | -2.3458 | |
| 74 | G | H | -1.5960 | |
| 75 | R | H | -1.5204 | |
| 76 | V | H | 0.0000 | |
| 77 | T | H | -0.7591 | |
| 78 | M | H | 0.0000 | |
| 79 | T | H | -0.3576 | |
| 80 | A | H | -0.2469 | |
| 81 | D | H | -0.6368 | |
| 82 | T | H | -0.2376 | |
| 83 | S | H | -0.4172 | |
| 84 | T | H | -0.4541 | |
| 85 | S | H | -0.4781 | |
| 86 | T | H | 0.0000 | |
| 87 | A | H | 0.0000 | |
| 88 | Y | H | -0.4593 | |
| 89 | M | H | 0.0000 | |
| 90 | D | H | -1.2559 | |
| 91 | L | H | 0.0000 | |
| 92 | R | H | -1.5903 | |
| 93 | S | H | -1.4143 | |
| 94 | L | H | 0.0000 | |
| 95 | R | H | -2.9722 | |
| 96 | S | H | -2.3107 | |
| 97 | D | H | -2.4977 | |
| 98 | D | H | 0.0000 | |
| 99 | T | H | -0.8977 | |
| 100 | A | H | 0.0000 | |
| 101 | V | H | 0.0078 | |
| 102 | Y | H | 0.0000 | |
| 103 | Y | H | 0.0000 | |
| 104 | C | H | 0.0000 | |
| 105 | A | H | 0.0000 | |
| 106 | R | H | 0.0000 | |
| 107 | E | H | -0.0196 | |
| 108 | G | H | 0.0000 | |
| 109 | S | H | -0.1656 | |
| 110 | S | H | -0.4257 | |
| 111 | S | H | -0.6910 | |
| 111A | S | H | -1.0249 | |
| 111B | G | H | -1.2372 | |
| 112B | D | H | -1.7355 | |
| 112A | Y | H | -0.2361 | |
| 112 | Y | H | 0.1832 | |
| 113 | Y | H | 0.4772 | |
| 114 | G | H | 0.0000 | |
| 115 | M | H | 0.0000 | |
| 116 | D | H | 0.0000 | |
| 117 | V | H | 0.1559 | |
| 118 | W | H | -0.0423 | |
| 119 | G | H | 0.0000 | |
| 120 | Q | H | -1.2299 | |
| 121 | G | H | -0.6171 | |
| 122 | T | H | 0.0000 | |
| 123 | T | H | -0.0267 | |
| 124 | V | H | 0.0000 | |
| 125 | T | H | -0.2977 | |
| 126 | V | H | 0.0000 | |
| 127 | S | H | -1.0783 | |
| 128 | S | H | -0.8370 | |
| 1 | D | L | -1.4165 | |
| 2 | I | L | 0.0000 | |
| 3 | V | L | 0.9565 | |
| 4 | M | L | 0.0000 | |
| 5 | T | L | -0.1111 | |
| 6 | Q | L | 0.0000 | |
| 7 | T | L | 0.1127 | |
| 8 | P | L | 0.3916 | |
| 9 | L | L | 1.1655 | |
| 10 | S | L | 0.2933 | |
| 11 | L | L | 0.2060 | |
| 12 | S | L | -0.6486 | |
| 13 | V | L | 0.0000 | |
| 14 | T | L | -1.5536 | |
| 15 | P | L | -1.7560 | |
| 16 | G | L | -1.9260 | |
| 17 | Q | L | -2.1314 | |
| 18 | P | L | -1.6925 | |
| 19 | A | L | 0.0000 | |
| 20 | S | L | -0.6921 | |
| 21 | I | L | 0.0000 | |
| 22 | S | L | -0.7037 | |
| 23 | C | L | 0.0000 | |
| 24 | K | L | -1.5027 | |
| 25 | S | L | 0.0000 | |
| 26 | S | L | -0.5597 | |
| 27 | Q | L | -0.8946 | |
| 28 | S | L | -0.5748 | |
| 29 | L | L | 0.0000 | |
| 30 | L | L | 0.3094 | |
| 31 | H | L | -0.6555 | |
| 32 | T | L | -1.0282 | |
| 34 | D | L | -2.0238 | |
| 35 | G | L | -1.1992 | |
| 36 | T | L | -0.4415 | |
| 37 | T | L | -0.0915 | |
| 38 | Y | L | 0.3122 | |
| 39 | L | L | 0.0000 | |
| 40 | Y | L | 0.0000 | |
| 41 | W | L | 0.0000 | |
| 42 | Y | L | 0.0000 | |
| 43 | L | L | 0.0000 | |
| 44 | Q | L | -0.6139 | |
| 45 | K | L | -1.0540 | |
| 46 | P | L | -0.7765 | |
| 47 | G | L | -1.1616 | |
| 48 | Q | L | -1.7187 | |
| 49 | P | L | -1.1149 | |
| 50 | P | L | 0.0000 | |
| 51 | Q | L | -0.5351 | |
| 52 | L | L | 0.0000 | |
| 53 | L | L | 0.0000 | |
| 54 | I | L | 0.0000 | |
| 55 | Y | L | -0.1206 | |
| 56 | E | L | -0.1303 | |
| 57 | V | L | 0.0000 | |
| 65 | S | L | -0.8282 | |
| 66 | N | L | -0.9724 | |
| 67 | R | L | -1.5498 | |
| 68 | F | L | -0.4963 | |
| 69 | S | L | -0.5724 | |
| 70 | G | L | -0.8679 | |
| 71 | V | L | 0.0000 | |
| 72 | P | L | -1.2126 | |
| 74 | D | L | -2.1891 | |
| 75 | R | L | 0.0000 | |
| 76 | F | L | 0.0000 | |
| 77 | S | L | -1.2582 | |
| 78 | G | L | -0.8828 | |
| 79 | S | L | -0.9251 | |
| 80 | G | L | -1.2758 | |
| 83 | S | L | -0.9168 | |
| 84 | G | L | -0.7571 | |
| 85 | T | L | -1.4014 | |
| 86 | D | L | -2.4724 | |
| 87 | F | L | 0.0000 | |
| 88 | T | L | -1.0368 | |
| 89 | L | L | 0.0000 | |
| 90 | K | L | -1.3445 | |
| 91 | I | L | 0.0000 | |
| 92 | S | L | -1.7933 | |
| 93 | R | L | -2.4721 | |
| 94 | V | L | 0.0000 | |
| 95 | E | L | -2.6666 | |
| 96 | A | L | -1.7490 | |
| 97 | E | L | -2.1337 | |
| 98 | D | L | 0.0000 | |
| 99 | V | L | -0.5881 | |
| 100 | G | L | 0.0000 | |
| 101 | I | L | 0.1463 | |
| 102 | Y | L | 0.0000 | |
| 103 | Y | L | 0.0000 | |
| 104 | C | L | 0.0000 | |
| 105 | M | L | 0.0000 | |
| 106 | Q | L | 0.0000 | |
| 107 | N | L | 0.0000 | |
| 108 | I | L | 0.4508 | |
| 109 | Q | L | -0.1231 | |
| 114 | L | L | 0.4799 | |
| 115 | P | L | -0.2871 | |
| 116 | W | L | 0.0000 | |
| 117 | T | L | 0.1043 | |
| 118 | F | L | 0.1229 | |
| 119 | G | L | 0.0000 | |
| 120 | Q | L | -0.6535 | |
| 121 | G | L | 0.0000 | |
| 122 | T | L | 0.0000 | |
| 123 | K | L | -0.3072 | |
| 124 | L | L | 0.0000 | |
| 125 | E | L | -0.7945 | |
| 126 | I | L | -0.8853 | |
| 127 | K | L | -1.7023 |