Project name: VHH1_3

Status: done

Started: 2024-06-10 13:08:07
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Chain sequence(s) H: QVQLQESGGGLVQPGGSLRLSCVLSNGIFSTYGMNWYRQAPGKQREFVASITSSGSTNYSPSVKGRFTISRENAKSTVNLQMNNLNPEDTAVYYCNTWSTWGQGTQVTVSS
input PDB
Selected Chain(s) H
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with H chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:23)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:24)
Show buried residues

Minimal score value
-2.9744
Maximal score value
1.4612
Average score
-0.679
Total score value
-75.3658

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.6490
2 V H -0.9525
3 Q H -1.8608
4 L H 0.0000
5 Q H -1.2860
6 E H 0.0000
7 S H -0.9967
8 G H -1.2045
9 G H -0.6397
11 G H 0.1111
12 L H 1.1562
13 V H 0.1053
14 Q H -1.3375
15 P H -1.7074
16 G H -1.6867
17 G H -1.1157
18 S H -1.3212
19 L H -0.9765
20 R H -2.1264
21 L H 0.0000
22 S H -0.6623
23 C H 0.0000
24 V H 0.1307
25 L H 0.0000
26 S H -1.0344
27 N H -1.2620
28 G H -0.3470
29 I H 1.4612
30 F H 0.0000
35 S H -0.2573
36 T H 0.2825
37 Y H 0.6260
38 G H 0.0367
39 M H 0.0000
40 N H 0.2471
41 W H 0.0000
42 Y H 0.0000
43 R H 0.0000
44 Q H -1.6331
45 A H 0.0000
46 P H -1.4678
47 G H -1.7960
48 K H -2.9744
49 Q H -2.7509
50 R H -2.0885
51 E H -1.4911
52 F H -0.0855
53 V H 0.0000
54 A H 0.0000
55 S H -0.3497
56 I H 0.0000
57 T H -0.6332
58 S H -0.6729
59 S H -0.6520
63 G H -0.9473
64 S H -0.8010
65 T H -0.9204
66 N H -1.5935
67 Y H -1.0469
68 S H -0.8197
69 P H -1.0375
70 S H -0.9779
71 V H 0.0000
72 K H -2.2697
74 G H -1.6491
75 R H -1.6141
76 F H 0.0000
77 T H -1.0125
78 I H 0.0000
79 S H -0.6029
80 R H -1.1960
81 E H -1.5978
82 N H -1.4405
83 A H -1.3822
84 K H -2.0086
85 S H -0.8510
86 T H -0.7536
87 V H 0.0000
88 N H -0.7858
89 L H 0.0000
90 Q H -1.2309
91 M H 0.0000
92 N H -1.6576
93 N H -2.1009
94 L H 0.0000
95 N H -1.8237
96 P H -1.5629
97 E H -2.1203
98 D H 0.0000
99 T H -0.7191
100 A H 0.0000
101 V H -0.2841
102 Y H 0.0000
103 Y H -0.2543
104 C H 0.0000
105 N H 0.0000
106 T H 0.0000
107 W H 1.1289
116 S H 0.4596
117 T H 0.2452
118 W H 0.0659
119 G H -0.8010
120 Q H -1.5376
121 G H 0.0000
122 T H -0.8069
123 Q H -0.7076
124 V H 0.0000
125 T H -0.1050
126 V H 0.0000
127 S H -0.6160
128 S H -0.7676
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Laboratory of Theory of Biopolymers 2018