Project name: N38 Agg

Status: done

Started: 2026-05-28 07:49:26
Settings
Chain sequence(s) H: FTSESVSEGHPDKIADQISDAVLDAILAQDPKARVACETLVKTGMVVVAGEITTNAWVDYEEIVRKVIKDIGYNSSDMGFDWETCAVLNAIGKQSPGDQGLMFGYASNETDVLMPAPITYAHRLVERQAEVRKNGTLPWLRPDAKSQVTFRYENGKPVGIDAVVLSTQHSPDISQKDLREAVMEEIIKPVLPAEWLHKDTRYFINPTGRFVIGGPMGDCGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLADRCEIQVSYAIGVAEPTSISVDTFGTGKISDEKIVELVREHFDLRPRGIIQMLDLLRPIYRKTAAYGHFGREDPDFTWERTDKAEALRAAAG
E: YLFTSESVSEGHPDKIADQISDAVLDAILAQDPKARVACETLVKTGMVVVAGEITTNAWVDYEEIVRKVIKDIGYNSSDMGFDWETCAVLNAIGKQSPDQGLMMFGYASNETDVLMPAPITYAHRLVERQAEVRKNGTLPWLRPDAKSQVTFRYENGKPVGIDAVVLSTQHSPDISQKDLREAVMEEIIKPVLPAEWLHKDTRYFINPTGRFVIGGPMGDCGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLADRCEIQVSYAIGVAEPTSISVDTFGTGKISDEKIVELVREHFDLRPRGIIQMLDLLRPIYRKTAAYGHFGREDPDFTWERTDKAEALRAAAGL
input PDB
Selected Chain(s) E,H
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:12:38)
[INFO]       Main:     Simulation completed successfully.                                          (00:12:45)
Show buried residues

Minimal score value
-3.9739
Maximal score value
1.8048
Average score
-0.7659
Total score value
-557.6017

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
4 Y E 0.4181
5 L E 0.2747
6 F E 0.0000
7 T E 0.0000
8 S E 0.0000
9 E E -0.7462
10 S E 0.0000
11 V E 0.0000
12 S E 0.0000
13 E E 0.0000
14 G E 0.0000
15 H E -0.3872
16 P E 0.0000
17 D E 0.0000
18 K E 0.0000
19 I E 0.0000
20 A E 0.0000
21 D E 0.0000
22 Q E 0.0000
23 I E 0.0000
24 S E 0.0000
25 D E 0.0000
26 A E 0.0000
27 V E 0.0000
28 L E 0.0000
29 D E -0.6599
30 A E -0.3712
31 I E 0.0000
32 L E 0.0000
33 A E -0.9264
34 Q E -1.5909
35 D E -1.7825
36 P E -1.5595
37 K E -2.3837
38 A E 0.0000
39 R E -2.7759
40 V E 0.0000
41 A E -0.9399
42 C E 0.0000
43 E E -0.2332
44 T E 0.0000
45 L E 0.0000
46 V E 0.0000
47 K E 0.0000
48 T E -0.4366
49 G E -0.1807
50 M E 0.3018
51 V E 0.0000
52 V E 0.0000
53 V E 0.0000
54 A E 0.0000
55 G E 0.0000
56 E E -1.8381
57 I E 0.0000
58 T E -2.4970
59 T E 0.0000
60 N E -1.6767
61 A E -0.5548
62 W E 0.5306
63 V E -0.4686
64 D E -1.7526
65 Y E -1.4539
66 E E -2.5976
67 E E -3.0926
68 I E 0.0000
69 V E 0.0000
70 R E -2.7000
71 K E -3.1426
72 V E 0.0000
73 I E 0.0000
74 K E -3.1891
75 D E -3.0635
76 I E 0.0000
77 G E -1.8535
78 Y E 0.0000
79 N E -2.5029
80 S E -1.6939
81 S E -1.1857
82 D E -1.7505
83 M E -0.4203
84 G E -0.2686
85 F E 0.0000
86 D E -1.8679
87 W E -2.3407
88 E E -2.5240
89 T E -1.1968
90 C E 0.0000
91 A E -0.0575
92 V E -0.0763
93 L E 0.3491
94 N E -0.8764
95 A E -0.5764
96 I E -0.9712
97 G E -1.6631
98 K E -2.5772
99 Q E -2.7493
100 S E -2.1496
101 P E -2.2552
102 D E -2.0753
120 Q E -1.0416
121 G E -0.9085
122 L E 0.0000
123 M E 0.0000
124 F E 0.0000
125 G E 0.0000
126 Y E 0.0000
127 A E 0.0000
128 S E 0.0000
129 N E -2.3469
130 E E -1.7767
131 T E 0.0000
132 D E -2.0508
133 V E 0.0000
134 L E -1.1253
135 M E 0.0000
136 P E 0.0000
137 A E 0.0000
138 P E 0.0000
139 I E 0.0000
140 T E 0.0000
141 Y E -0.1527
142 A E 0.0000
143 H E 0.0000
144 R E -0.7835
145 L E 0.0000
146 V E 0.0000
147 E E -1.5533
148 R E -1.8182
149 Q E 0.0000
150 A E 0.0000
151 E E -3.0337
152 V E 0.0000
153 R E -2.2402
154 K E -3.3892
155 N E -2.8818
156 G E -2.0209
157 T E -1.3567
158 L E 0.0000
159 P E -1.0005
160 W E -0.4911
161 L E 0.0000
162 R E 0.0000
163 P E 0.0000
164 D E 0.0000
165 A E 0.0000
166 K E -1.0694
167 S E 0.0000
168 Q E -0.5659
169 V E 0.0000
170 T E 0.0000
171 F E 0.0000
172 R E -0.8024
173 Y E -1.2804
174 E E -2.5797
175 N E -2.5051
176 G E -2.0721
177 K E -2.7356
178 P E 0.0000
179 V E -0.8464
180 G E 0.0000
181 I E 0.0000
182 D E -1.4069
183 A E 0.0000
184 V E 0.0000
185 V E 0.0000
186 L E 0.0000
187 S E -0.5851
188 T E 0.0000
189 Q E 0.0000
190 H E 0.0000
191 S E -0.5348
192 P E -1.0758
193 D E -1.7491
194 I E -1.7485
195 S E -2.2879
196 Q E -3.2046
197 K E -3.6649
198 D E -3.6770
199 L E 0.0000
200 R E -3.1342
201 E E -3.7953
202 A E -2.6190
203 V E 0.0000
204 M E -1.9923
205 E E -3.0319
206 E E -2.1307
207 I E 0.0000
208 I E 0.0000
209 K E -2.0719
210 P E -1.3841
211 V E -0.6408
212 L E 0.0000
213 P E -0.7229
214 A E -1.1106
215 E E -1.7455
216 W E -0.8549
217 L E -1.5237
218 H E -2.4287
219 K E -2.6838
220 D E -2.1054
221 T E -2.0043
222 R E -2.2415
223 Y E -0.6311
224 F E -0.0565
225 I E 0.0000
226 N E 0.0000
227 P E -0.7068
228 T E -0.5157
229 G E -0.9962
230 R E -1.2480
231 F E 0.1419
232 V E 0.4580
233 I E 1.3944
234 G E 0.0000
235 G E 0.0000
236 P E 0.0000
237 M E 0.1051
238 G E -0.8796
239 D E -1.5117
240 C E 0.0000
241 G E 0.0000
242 L E 0.0000
243 T E 0.0000
244 G E 0.0000
245 R E -0.3832
246 K E -0.3989
247 I E 0.0000
248 I E 0.0000
249 V E 0.0000
250 D E 0.0000
251 T E 0.0000
252 Y E 0.0000
253 G E 0.0000
254 G E 0.0000
255 M E 0.0000
256 A E 0.0000
257 R E -0.5157
258 H E 0.0000
259 G E -0.3761
260 G E -0.4199
261 G E -0.4164
262 A E 0.0000
263 F E 0.0000
264 S E 0.0000
265 G E 0.0000
266 K E -0.7545
267 D E 0.0000
268 P E 0.0000
269 S E -1.3729
270 K E -1.2398
271 V E -0.8487
272 D E -0.8906
273 R E 0.0000
274 S E 0.0000
275 A E 0.0000
276 A E -0.0918
277 Y E 0.0000
278 A E 0.0000
279 G E 0.0000
280 R E 0.0000
281 Y E 0.0000
282 V E 0.0000
283 A E 0.0000
284 K E 0.0000
285 N E 0.0000
286 I E 0.0000
287 V E 0.0000
288 A E -1.2215
289 A E 0.0000
290 G E -1.2468
291 L E 0.0000
292 A E 0.0000
293 D E -2.2389
294 R E -1.4014
295 C E 0.0000
296 E E 0.0000
297 I E 0.0000
298 Q E 0.0000
299 V E 0.0000
300 S E -0.1238
301 Y E 0.1660
302 A E 0.7452
303 I E 1.8048
304 G E 1.0346
305 V E 1.5636
306 A E 0.2950
307 E E -1.3365
308 P E 0.0000
309 T E -0.1195
310 S E -0.4775
311 I E 0.0000
312 S E -0.6106
313 V E -0.6923
314 D E -0.8924
315 T E 0.0000
316 F E 0.0049
317 G E -0.8267
318 T E -1.1401
319 G E -1.6634
320 K E -2.0275
321 I E -1.2928
322 S E -1.8569
323 D E -2.6209
324 E E -2.9621
325 K E -2.5344
326 I E 0.0000
327 V E -2.2003
328 E E -3.3690
329 L E 0.0000
330 V E 0.0000
331 R E -2.8617
332 E E -2.9011
333 H E -1.8461
334 F E 0.0000
335 D E -2.0033
336 L E 0.0000
337 R E -1.5250
338 P E -1.5339
339 R E -2.3278
340 G E 0.0000
341 I E 0.0000
342 I E -1.3915
343 Q E -2.0386
344 M E -1.2181
345 L E 0.0000
346 D E -1.8760
347 L E 0.0000
348 L E -0.8017
349 R E -1.0071
350 P E -0.7441
351 I E 0.0000
352 Y E 0.0000
353 R E -0.8678
354 K E -1.1336
355 T E 0.0000
356 A E 0.0000
357 A E 0.0000
358 Y E 0.0000
359 G E 0.0000
360 H E 0.0000
361 F E 0.0000
362 G E 0.0000
363 R E -1.3807
364 E E -2.6318
365 D E -2.0422
366 P E -1.5260
367 D E -1.6502
368 F E 0.0000
369 T E -1.5248
370 W E 0.0000
371 E E 0.0000
372 R E -2.5336
373 T E -1.9506
374 D E -2.7990
375 K E -2.1688
376 A E 0.0000
377 E E -2.5186
378 A E -1.5749
379 L E 0.0000
380 R E -1.4557
381 A E -0.8196
382 A E -0.7826
383 A E -0.5776
384 G E -0.3220
385 L E -0.2989
6 F H 0.1092
7 T H -0.1432
8 S H 0.0000
9 E H -0.7050
10 S H 0.0000
11 V H 0.0000
12 S H 0.0000
13 E H -0.6164
14 G H 0.0000
15 H H 0.0000
16 P H 0.0000
17 D H 0.0000
18 K H 0.0000
19 I H 0.0000
20 A H 0.0000
21 D H 0.0000
22 Q H 0.0000
23 I H 0.0000
24 S H 0.0000
25 D H 0.0000
26 A H 0.0000
27 V H 0.0000
28 L H 0.0000
29 D H -0.7191
30 A H -0.3522
31 I H 0.0000
32 L H 0.0000
33 A H -0.9314
34 Q H -1.6014
35 D H -1.8209
36 P H -1.5998
37 K H -2.4265
38 A H 0.0000
39 R H -2.8794
40 V H 0.0000
41 A H -0.9826
42 C H 0.0000
43 E H -0.2505
44 T H 0.0000
45 L H 0.0000
46 V H 0.0000
47 K H 0.0000
48 T H -0.3933
49 G H -0.1816
50 M H 0.3371
51 V H 0.0000
52 V H 0.0000
53 V H 0.0000
54 A H 0.0000
55 G H 0.0000
56 E H -1.9074
57 I H 0.0000
58 T H 0.0000
59 T H 0.0000
60 N H -1.6930
61 A H -0.5836
62 W H 0.5753
63 V H -0.3681
64 D H -1.5767
65 Y H -1.1848
66 E H -2.3669
67 E H -3.0642
68 I H 0.0000
69 V H 0.0000
70 R H -2.8088
71 K H -3.3229
72 V H 0.0000
73 I H 0.0000
74 K H -3.4768
75 D H -3.2431
76 I H 0.0000
77 G H -2.0230
78 Y H 0.0000
79 N H -2.6051
80 S H -1.7173
81 S H -1.2511
82 D H -1.8671
83 M H -0.6455
84 G H -0.4437
85 F H 0.0000
86 D H -1.9309
87 W H -2.2848
88 E H -2.5899
89 T H -1.2088
90 C H 0.0000
91 A H -0.0099
92 V H 0.1596
93 L H 0.8550
94 N H -0.1953
95 A H -0.2946
96 I H -0.8461
97 G H -1.7079
98 K H -2.8119
99 Q H -2.4242
100 S H -1.6756
101 P H -1.4124
118 G H -1.4028
119 D H -1.8044
120 Q H 0.0000
121 G H -0.6940
122 L H 0.0000
123 M H 0.0000
124 F H 0.0000
125 G H 0.0000
126 Y H 0.0000
127 A H 0.0000
128 S H 0.0000
129 N H -2.0962
130 E H -1.5706
131 T H 0.0000
132 D H -1.9249
133 V H -1.2067
134 L H -0.9409
135 M H 0.0000
136 P H 0.0000
137 A H 0.0000
138 P H 0.0000
139 I H 0.0000
140 T H 0.0000
141 Y H -0.0789
142 A H 0.0000
143 H H 0.0000
144 R H -0.6365
145 L H 0.0000
146 V H 0.0000
147 E H -1.1803
148 R H -1.3881
149 Q H 0.0000
150 A H 0.0000
151 E H -2.1320
152 V H 0.0000
153 R H -1.9809
154 K H -3.1230
155 N H -2.6524
156 G H -1.9071
157 T H -1.2413
158 L H 0.0000
159 P H -1.0230
160 W H -0.4912
161 L H 0.0000
162 R H 0.0000
163 P H 0.0000
164 D H 0.0000
165 A H 0.0000
166 K H -0.8797
167 S H 0.0000
168 Q H -0.4645
169 V H 0.0000
170 T H -0.4884
171 F H 0.0000
172 R H -0.9441
173 Y H -1.5123
174 E H -2.9350
175 N H -2.7300
176 G H -2.1617
177 K H -2.8864
178 P H 0.0000
179 V H -0.8355
180 G H 0.0000
181 I H 0.0000
182 D H -1.7711
183 A H -1.0722
184 V H 0.0000
185 V H -0.0489
186 L H 0.0000
187 S H -0.4053
188 T H 0.0000
189 Q H 0.0000
190 H H 0.0000
191 S H -0.6865
192 P H -1.2551
193 D H -1.7262
194 I H -1.7282
195 S H -2.4284
196 Q H -3.5386
197 K H -3.8269
198 D H -3.8012
199 L H 0.0000
200 R H -3.4234
201 E H -3.9739
202 A H -2.7612
203 V H 0.0000
204 M H -2.0662
205 E H -3.0833
206 E H -2.1516
207 I H 0.0000
208 I H 0.0000
209 K H -1.9980
210 P H -1.3338
211 V H -0.5593
212 L H 0.0000
213 P H -0.7011
214 A H -1.0338
215 E H -1.6900
216 W H -0.8036
217 L H -1.4776
218 H H -2.2222
219 K H -2.7117
220 D H -2.4092
221 T H -2.2153
222 R H -2.2851
223 Y H -0.5497
224 F H 0.3163
225 I H -0.4790
226 N H 0.0000
227 P H -0.4688
228 T H -0.5047
229 G H -1.2441
230 R H -1.8136
231 F H -0.3451
232 V H -0.1044
233 I H 0.7245
234 G H 0.0000
235 G H 0.0000
236 P H 0.0000
237 M H 0.0395
238 G H -0.8313
239 D H -1.3738
240 C H -0.6192
241 G H 0.0000
242 L H 0.0000
243 T H 0.0000
244 G H 0.0000
245 R H 0.0000
246 K H -0.3314
247 I H 0.0000
248 I H 0.0000
249 V H 0.0000
250 D H 0.0000
251 T H 0.0000
252 Y H 0.0000
253 G H 0.0000
254 G H 0.0000
255 M H 0.0000
256 A H 0.0000
257 R H -0.5081
258 H H 0.0000
259 G H -0.5136
260 G H -0.5769
261 G H -0.5407
262 A H 0.0000
263 F H 0.0000
264 S H 0.0000
265 G H 0.0000
266 K H -0.8359
267 D H 0.0000
268 P H 0.0000
269 S H -1.3350
270 K H -1.0535
271 V H -0.7756
272 D H -1.0434
273 R H 0.0000
274 S H 0.0000
275 A H 0.0000
276 A H -0.1653
277 Y H 0.0000
278 A H 0.0000
279 G H 0.0000
280 R H 0.0000
281 Y H 0.0000
282 V H 0.0000
283 A H 0.0000
284 K H 0.0000
285 N H 0.0000
286 I H 0.0000
287 V H 0.0000
288 A H -1.2783
289 A H 0.0000
290 G H -1.4588
291 L H 0.0000
292 A H 0.0000
293 D H -1.7592
294 R H -1.2070
295 C H 0.0000
296 E H 0.0000
297 I H 0.0000
298 Q H -0.1550
299 V H 0.0000
300 S H 0.0000
301 Y H 0.0000
302 A H -0.7588
303 I H -0.4305
304 G H -0.6229
305 V H -0.3674
306 A H -1.4504
307 E H -2.2426
308 P H 0.0000
309 T H -0.3030
310 S H -0.1115
311 I H 0.0000
312 S H -0.2936
313 V H 0.0000
314 D H -0.8608
315 T H 0.0000
316 F H 0.5253
317 G H -0.5469
318 T H -0.8565
319 G H -1.4963
320 K H -2.0485
321 I H -1.3385
322 S H -1.8407
323 D H -2.6832
324 E H -2.9724
325 K H -2.5341
326 I H 0.0000
327 V H -2.2891
328 E H -3.4903
329 L H 0.0000
330 V H 0.0000
331 R H -3.2613
332 E H -3.1007
333 H H -1.9731
334 F H 0.0000
335 D H -2.0665
336 L H 0.0000
337 R H -2.1808
338 P H -1.9413
339 R H -2.3232
340 G H 0.0000
341 I H 0.0000
342 I H -1.3794
343 Q H -2.0734
344 M H -1.2526
345 L H 0.0000
346 D H -1.9620
347 L H 0.0000
348 L H -0.8415
349 R H -1.0435
350 P H -0.8110
351 I H 0.0000
352 Y H 0.0000
353 R H -1.1422
354 K H -1.6079
355 T H 0.0000
356 A H 0.0000
357 A H 0.0000
358 Y H 0.0000
359 G H 0.0000
360 H H 0.0000
361 F H 0.0000
362 G H 0.0000
363 R H -1.2165
364 E H -2.5065
365 D H -1.9607
366 P H -1.5102
367 D H -1.7691
368 F H 0.0000
369 T H -1.5673
370 W H 0.0000
371 E H 0.0000
372 R H -2.5719
373 T H -1.9801
374 D H -2.8202
375 K H -2.3062
376 A H 0.0000
377 E H -2.9161
378 A H -1.8693
379 L H 0.0000
380 R H -2.5679
381 A H -1.4317
382 A H -0.9369
383 A H -1.0395
384 G H -0.8827
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Laboratory of Theory of Biopolymers 2018