Project name: KAP1

Status: done

Started: 2026-07-08 06:05:43
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Chain sequence(s) A: MSYNCCSRNFSSRSCGGYLHYPASSCGFSYPSNLVYSTDLCSPSTCQLGSSLYRGCQEQTSCYRPRTSLLCSPCQTTYSGSLGFGSSSCRSLGYGSRSCYVGCGSSG
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:25)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:25)
Show buried residues

Minimal score value
-2.8989
Maximal score value
2.698
Average score
0.1766
Total score value
18.8984

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 1.2533
2 S A 0.7135
3 Y A 1.0905
4 N A -0.1691
5 C A 0.5136
6 C A 0.2221
7 S A -0.7975
8 R A -1.8593
9 N A -1.2804
10 F A 0.5020
11 S A -0.2886
12 S A -0.9058
13 R A -1.7316
14 S A -0.7666
15 C A -0.1005
16 G A -0.1227
17 G A 0.4025
18 Y A 1.5111
19 L A 1.8866
20 H A 0.6597
21 Y A 1.0602
22 P A 0.2656
23 A A 0.0910
24 S A -0.0915
25 S A 0.1018
26 C A 0.7799
27 G A 0.7023
28 F A 1.9991
29 S A 1.1987
30 Y A 1.4508
31 P A 0.3927
32 S A -0.1350
33 N A 0.0162
34 L A 2.0423
35 V A 2.6980
36 Y A 2.0888
37 S A 0.9475
38 T A -0.0262
39 D A -0.7690
40 L A 0.8736
41 C A 0.7429
42 S A 0.1645
43 P A 0.0121
44 S A -0.2970
45 T A -0.0707
46 C A 0.4338
47 Q A -0.2985
48 L A 0.8649
49 G A 0.0478
50 S A -0.0163
51 S A 0.5641
52 L A 1.4934
53 Y A 1.0989
54 R A -1.1020
55 G A -0.9962
56 C A -0.9834
57 Q A -2.4666
58 E A -2.8989
59 Q A -2.3030
60 T A -1.0804
61 S A -0.4425
62 C A 0.5507
63 Y A 0.3910
64 R A -1.7156
65 P A -1.6691
66 R A -2.2567
67 T A -0.8164
68 S A 0.5282
69 L A 2.0963
70 L A 2.4859
71 C A 1.7657
72 S A 0.6817
73 P A 0.1082
74 C A 0.0498
75 Q A -0.8196
76 T A -0.1513
77 T A 0.1712
78 Y A 0.8527
79 S A 0.3544
80 G A 0.1806
81 S A 0.6458
82 L A 1.4576
83 G A 1.0392
84 F A 1.7100
85 G A 0.5240
86 S A -0.1341
87 S A 0.1082
88 S A -0.1546
89 C A -0.1877
90 R A -1.4848
91 S A -0.5090
92 L A 0.6976
93 G A 0.2971
94 Y A 0.8821
95 G A -0.2081
96 S A -0.8434
97 R A -1.6496
98 S A -0.3058
99 C A 1.0126
100 Y A 2.2698
101 V A 2.3882
102 G A 0.9921
103 C A 0.7785
104 G A -0.2990
105 S A -0.5301
106 S A -0.5855
107 G A -0.6869
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Laboratory of Theory of Biopolymers 2018