| Chain sequence(s) |
A: NWTNVISKLKKIEDLIQSMHIDATLYTESDVHPSCKVTAMKCFLLELQVISLESGDASIHDTVENLKRLANNSLSSNGNVTESGCKECEELERKNIKEFLQSFVHIVQMFTNTS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 5 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Mutated residues | VT80A,LR45A,LR52A |
| Energy difference between WT (input) and mutated protein (by FoldX) | 0.412272 kcal/mol |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] FoldX: Building mutant model (00:00:45)
[INFO] FoldX: Starting FoldX energy minimalization (00:02:11)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:03:02)
[INFO] Main: Simulation completed successfully. (00:03:02)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | N | A | -1.2730 | |
| 2 | W | A | 0.0000 | |
| 3 | T | A | -0.1751 | |
| 4 | N | A | -0.6027 | |
| 5 | V | A | 0.0000 | |
| 6 | I | A | 0.2914 | |
| 7 | S | A | -0.1549 | |
| 8 | K | A | -0.4225 | |
| 9 | L | A | 0.0000 | |
| 10 | K | A | -2.0165 | |
| 11 | K | A | -1.4657 | |
| 12 | I | A | 0.0000 | |
| 13 | E | A | -1.5531 | |
| 14 | D | A | -1.9136 | |
| 15 | L | A | 0.0413 | |
| 16 | I | A | 0.0000 | |
| 17 | Q | A | -1.2367 | |
| 18 | S | A | -0.3835 | |
| 19 | M | A | 0.0301 | |
| 20 | H | A | -0.8965 | |
| 21 | I | A | -0.2455 | |
| 22 | D | A | -1.7413 | |
| 23 | A | A | -0.3270 | |
| 24 | T | A | -0.1343 | |
| 25 | L | A | 0.0000 | |
| 26 | Y | A | -0.0470 | |
| 27 | T | A | 0.0000 | |
| 28 | E | A | -0.2405 | |
| 29 | S | A | -0.5434 | |
| 30 | D | A | -1.7811 | |
| 31 | V | A | -0.2833 | |
| 32 | H | A | -0.9931 | |
| 33 | P | A | -0.4668 | |
| 34 | S | A | -0.2395 | |
| 35 | C | A | 0.0182 | |
| 36 | K | A | -0.2006 | |
| 37 | V | A | 0.2240 | |
| 38 | T | A | 0.0278 | |
| 39 | A | A | 0.0000 | |
| 40 | M | A | 0.0000 | |
| 41 | K | A | -1.1991 | |
| 42 | C | A | 0.0000 | |
| 43 | F | A | 0.0000 | |
| 44 | L | A | 0.0000 | |
| 45 | R | A | -1.6358 | mutated: LR45A |
| 46 | E | A | 0.0000 | |
| 47 | L | A | 0.0000 | |
| 48 | Q | A | -0.4159 | |
| 49 | V | A | 0.1995 | |
| 50 | I | A | 0.0000 | |
| 51 | S | A | 0.0000 | |
| 52 | R | A | -2.1733 | mutated: LR52A |
| 53 | E | A | -2.1591 | |
| 54 | S | A | -0.4441 | |
| 55 | G | A | -0.5624 | |
| 56 | D | A | -0.5796 | |
| 57 | A | A | -0.1373 | |
| 58 | S | A | -0.1220 | |
| 59 | I | A | 0.0000 | |
| 60 | H | A | -1.0706 | |
| 61 | D | A | -1.9251 | |
| 62 | T | A | 0.0000 | |
| 63 | V | A | 0.0000 | |
| 64 | E | A | -1.8708 | |
| 65 | N | A | -0.6107 | |
| 66 | L | A | 0.0000 | |
| 67 | K | A | -0.8117 | |
| 68 | R | A | -1.5343 | |
| 69 | L | A | -0.0944 | |
| 70 | A | A | 0.0000 | |
| 71 | N | A | -0.5796 | |
| 72 | N | A | -1.3420 | |
| 73 | S | A | -0.2333 | |
| 74 | L | A | 0.1050 | |
| 75 | S | A | -0.2241 | |
| 76 | S | A | -0.4782 | |
| 77 | N | A | -1.3945 | |
| 78 | G | A | -0.9266 | |
| 79 | N | A | -1.3651 | |
| 80 | T | A | -0.2834 | mutated: VT80A |
| 81 | T | A | -0.1392 | |
| 82 | E | A | -0.3875 | |
| 83 | S | A | -0.3578 | |
| 84 | G | A | -0.4785 | |
| 85 | C | A | -0.2493 | |
| 86 | K | A | -2.0100 | |
| 87 | E | A | -2.1196 | |
| 88 | C | A | -0.5732 | |
| 89 | E | A | -2.1277 | |
| 90 | E | A | -2.1128 | |
| 91 | L | A | -0.4977 | |
| 92 | E | A | -2.0178 | |
| 93 | R | A | -1.6298 | |
| 94 | K | A | -0.7652 | |
| 95 | N | A | -0.9123 | |
| 96 | I | A | -0.2600 | |
| 97 | K | A | -1.8040 | |
| 98 | E | A | -1.0860 | |
| 99 | F | A | 0.0000 | |
| 100 | L | A | 0.0000 | |
| 101 | Q | A | -0.7776 | |
| 102 | S | A | 0.0000 | |
| 103 | F | A | 0.0000 | |
| 104 | V | A | 0.2191 | |
| 105 | H | A | -0.9185 | |
| 106 | I | A | 0.0000 | |
| 107 | V | A | 0.0000 | |
| 108 | Q | A | -0.7191 | |
| 109 | M | A | 0.0479 | |
| 110 | F | A | 0.0000 | |
| 111 | T | A | -0.3255 | |
| 112 | N | A | -1.2889 | |
| 113 | T | A | -0.3357 | |
| 114 | S | A | -0.2255 |