Project name: 90dc0feac0c8415

Status: done

Started: 2024-12-19 07:18:52
Settings
Chain sequence(s) H: IVLTQSPGTLSLSPGERATLSCRASQSVSSSYLAWYQQKPGQAPRLLIYGASSRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGSSPRWTFGQGTKLEI
G: VQLVQSGAEVKKPGASVKVSCKASGYTFTSYGISWVRQAPGQGLEWMGWISAYTGNTNYAQKLQGRVTMTTDTSTSTAYMELRSLRSDDTAVYYCARGLLQGVVILDSYYYTMDVWGQGTTVTVS
input PDB
Selected Chain(s) G,H
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:46)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:48)
Show buried residues

Minimal score value
-3.3531
Maximal score value
2.9153
Average score
-0.5451
Total score value
-126.4639

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
2 V G 1.0489
3 Q G -0.3746
4 L G 0.0000
5 V G 0.2630
6 Q G 0.0000
7 S G -0.7041
8 G G -0.7622
9 A G -0.7559
11 E G -1.1898
12 V G 0.1971
13 K G -1.3579
14 K G -2.2031
15 P G -2.2867
16 G G -1.8399
17 A G -1.5329
18 S G -1.9711
19 V G -1.7331
20 K G -2.2904
21 V G 0.0000
22 S G 0.0000
23 C G 0.0000
24 K G -0.8364
25 A G -0.3172
26 S G -0.1742
27 G G 0.0468
28 Y G 0.2537
29 T G 0.1143
30 F G 0.0000
35 T G 0.4046
36 S G 0.4550
37 Y G 0.4071
38 G G 0.0000
39 I G 0.0000
40 S G 0.0000
41 W G 0.0000
42 V G 0.0000
43 R G -0.6233
44 Q G -0.8182
45 A G -1.0739
46 P G -0.8093
47 G G -1.2140
48 Q G -1.9405
49 G G -1.5344
50 L G 0.0000
51 E G -1.5449
52 W G 0.0000
53 M G 0.0000
54 G G 0.0000
55 W G 0.0000
56 I G 0.0000
57 S G 0.0000
58 A G 0.0000
59 Y G 0.8303
62 T G -0.1656
63 G G -0.8366
64 N G -1.3904
65 T G -0.9626
66 N G -0.9582
67 Y G -0.9759
68 A G -1.6087
69 Q G -2.3704
70 K G -2.5816
71 L G -1.7084
72 Q G -2.2960
74 G G -1.8066
75 R G -2.0323
76 V G 0.0000
77 T G -1.2528
78 M G 0.0000
79 T G -0.5732
80 T G -0.2383
81 D G -0.8448
82 T G -0.3251
83 S G -0.4758
84 T G -0.5469
85 S G -0.6544
86 T G 0.0000
87 A G 0.0000
88 Y G -0.6592
89 M G 0.0000
90 E G -2.4373
91 L G 0.0000
92 R G -3.0224
93 S G -2.0237
94 L G 0.0000
95 R G -3.3531
96 S G -2.5593
97 D G -2.6316
98 D G -1.8762
99 T G -1.0002
100 A G 0.0000
101 V G -0.0781
102 Y G 0.0000
103 Y G 0.0000
104 C G 0.0000
105 A G 0.0000
106 R G 0.0904
107 G G 0.0000
108 L G 0.3431
109 L G 0.9546
110 Q G 0.8079
111 G G 0.9182
111A V G 2.6157
111B V G 2.9153
111C I G 2.1315
112D L G 1.8741
112C D G 0.0691
112B S G 0.1501
112A Y G 0.4035
112 Y G 0.7083
113 Y G 0.4926
114 T G 0.0000
115 M G 0.0000
116 D G -0.1738
117 V G -0.0838
118 W G -0.3660
119 G G 0.0000
120 Q G -1.2692
121 G G 0.0000
122 T G 0.0000
123 T G -0.3045
124 V G 0.0000
125 T G -0.4565
126 V G 0.0000
127 S G -1.1683
2 I H 2.5318
3 V H 2.1410
4 L H 0.0000
5 T H -0.5997
6 Q H 0.0000
7 S H -0.8977
8 P H -0.6049
9 G H -0.3171
10 T H 0.0000
11 L H 0.1561
12 S H -0.1946
13 L H -0.2998
14 S H -0.7161
15 P H -1.5052
16 G H -2.3361
17 E H -2.9442
18 R H -2.7714
19 A H 0.0000
20 T H -0.8185
21 L H 0.0000
22 S H -1.0582
23 C H 0.0000
24 R H -2.4305
25 A H 0.0000
26 S H -0.2403
27 Q H -1.0239
28 S H -1.2729
29 V H -0.4938
30 S H -0.2255
36 S H -0.2051
37 S H 0.1156
38 Y H 0.4151
39 L H 0.0000
40 A H 0.0000
41 W H 0.0000
42 Y H 0.0000
43 Q H 0.0000
44 Q H 0.0000
45 K H -1.7648
46 P H -1.2395
47 G H -1.4045
48 Q H -2.0884
49 A H -1.5328
50 P H 0.0000
51 R H -2.0078
52 L H 0.0000
53 L H 0.0000
54 I H 0.0000
55 Y H 0.0102
56 G H 0.0000
57 A H 0.0000
65 S H -0.5009
66 S H -0.4351
67 R H -0.7112
68 A H -0.3280
69 T H -0.4318
70 G H -0.6044
71 I H -0.5142
72 P H -1.1063
74 D H -2.2895
75 R H -1.9022
76 F H 0.0000
77 S H -0.8549
78 G H -0.4311
79 S H -0.6769
80 G H -1.1628
83 S H -1.1742
84 G H -1.3076
85 T H -1.9525
86 D H -2.7325
87 F H 0.0000
88 T H -0.8639
89 L H 0.0000
90 T H -0.7835
91 I H 0.0000
92 S H -2.1693
93 R H -3.3434
94 L H 0.0000
95 E H -2.1898
96 P H -1.2860
97 E H -2.2641
98 D H 0.0000
99 F H -1.0327
100 A H 0.0000
101 V H 0.0000
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 Q H 0.0000
106 Q H 0.0000
107 Y H 0.0000
108 G H -0.0833
109 S H -0.4489
113 S H -0.6533
114 P H -0.8010
115 R H -1.1298
116 W H 0.0000
117 T H 0.2547
118 F H 0.0000
119 G H -0.7111
120 Q H -1.5224
121 G H -1.2683
122 T H 0.0000
123 K H -1.7732
124 L H 0.0000
125 E H -1.0482
126 I H 0.8538
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Laboratory of Theory of Biopolymers 2018