Project name: query_structure

Status: done

Started: 2026-03-17 00:56:13
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Chain sequence(s) A: QVQLVESGGGSVQAGGSLRLSCAASGSISSITYLGWFRQAPGKEREGVAALSTSDGTTYYADSVKGRFTVSLDNAKNTVYLQMNSLKPEDTALYYCAAATYGIWYPLTWWAYGYWGQGTQVTV
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:57)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:57)
Show buried residues

Minimal score value
-3.1686
Maximal score value
2.2246
Average score
-0.5838
Total score value
-71.8027

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.2879
2 V A -0.5989
3 Q A -0.8209
4 L A 0.0000
5 V A 0.9219
6 E A 0.0000
7 S A -0.5001
8 G A -1.2089
9 G A -1.1796
10 G A -0.8758
11 S A -0.5719
12 V A -0.5397
13 Q A -1.3213
14 A A -1.3630
15 G A -1.2531
16 G A -1.0061
17 S A -1.3371
18 L A -1.2290
19 R A -2.3140
20 L A 0.0000
21 S A -0.4068
22 C A 0.0000
23 A A -0.2061
24 A A -0.3106
25 S A -0.6392
26 G A -1.0007
27 S A -0.9578
28 I A 0.0000
29 S A -0.7340
30 S A -0.2441
31 I A 0.0000
32 T A -0.1000
33 Y A -0.0312
34 L A 0.0000
35 G A 0.0000
36 W A 0.0000
37 F A 0.0000
38 R A -1.0085
39 Q A -1.6990
40 A A -1.8127
41 P A -1.3265
42 G A -1.8800
43 K A -3.1660
44 E A -3.1686
45 R A -1.9002
46 E A -1.3616
47 G A 0.0000
48 V A 0.0000
49 A A 0.0000
50 A A 0.0000
51 L A 0.0000
52 S A 0.0000
53 T A -0.9350
54 S A -1.3179
55 D A -2.1261
56 G A -1.3195
57 T A -0.7841
58 T A -0.1388
59 Y A 0.2892
60 Y A -0.5790
61 A A 0.0000
62 D A -2.3785
63 S A -1.7651
64 V A 0.0000
65 K A -2.5441
66 G A -1.8352
67 R A -1.6615
68 F A 0.0000
69 T A -0.9860
70 V A 0.0000
71 S A -0.3229
72 L A -0.5973
73 D A -1.5538
74 N A -2.1343
75 A A -1.6399
76 K A -2.3707
77 N A -1.8753
78 T A 0.0000
79 V A 0.0000
80 Y A -0.5503
81 L A 0.0000
82 Q A -1.6324
83 M A 0.0000
84 N A -1.9199
85 S A -1.3323
86 L A 0.0000
87 K A -2.0449
88 P A -1.6603
89 E A -2.2066
90 D A 0.0000
91 T A -0.9838
92 A A 0.0000
93 L A -0.4401
94 Y A 0.0000
95 Y A -0.1842
96 C A 0.0000
97 A A 0.0000
98 A A 0.0000
99 A A 0.0000
100 T A 0.4812
101 Y A 1.0094
102 G A 0.5887
103 I A 0.0000
104 W A 1.7723
105 Y A 2.2246
106 P A 0.0000
107 L A 1.2900
108 T A 1.2135
109 W A 1.0187
110 W A 1.5472
111 A A 0.0000
112 Y A 0.0000
113 G A 0.3292
114 Y A 0.1694
115 W A 0.3075
116 G A -0.0806
117 Q A -0.8739
118 G A 0.0000
119 T A 0.0000
120 Q A -1.2599
121 V A 0.0000
122 T A -0.7456
123 V A -0.8248
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Laboratory of Theory of Biopolymers 2018