| Chain sequence(s) |
A: QVQLVESGGGSVQAGGSLRLSCAASGSISSITYLGWFRQAPGKEREGVAALSTSDGTTYYADSVKGRFTVSLDNAKNTVYLQMNSLKPEDTALYYCAAATYGIWYPLTWWAYGYWGQGTQVTV
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:57)
[INFO] Main: Simulation completed successfully. (00:00:57)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | A | -1.2879 | |
| 2 | V | A | -0.5989 | |
| 3 | Q | A | -0.8209 | |
| 4 | L | A | 0.0000 | |
| 5 | V | A | 0.9219 | |
| 6 | E | A | 0.0000 | |
| 7 | S | A | -0.5001 | |
| 8 | G | A | -1.2089 | |
| 9 | G | A | -1.1796 | |
| 10 | G | A | -0.8758 | |
| 11 | S | A | -0.5719 | |
| 12 | V | A | -0.5397 | |
| 13 | Q | A | -1.3213 | |
| 14 | A | A | -1.3630 | |
| 15 | G | A | -1.2531 | |
| 16 | G | A | -1.0061 | |
| 17 | S | A | -1.3371 | |
| 18 | L | A | -1.2290 | |
| 19 | R | A | -2.3140 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.4068 | |
| 22 | C | A | 0.0000 | |
| 23 | A | A | -0.2061 | |
| 24 | A | A | -0.3106 | |
| 25 | S | A | -0.6392 | |
| 26 | G | A | -1.0007 | |
| 27 | S | A | -0.9578 | |
| 28 | I | A | 0.0000 | |
| 29 | S | A | -0.7340 | |
| 30 | S | A | -0.2441 | |
| 31 | I | A | 0.0000 | |
| 32 | T | A | -0.1000 | |
| 33 | Y | A | -0.0312 | |
| 34 | L | A | 0.0000 | |
| 35 | G | A | 0.0000 | |
| 36 | W | A | 0.0000 | |
| 37 | F | A | 0.0000 | |
| 38 | R | A | -1.0085 | |
| 39 | Q | A | -1.6990 | |
| 40 | A | A | -1.8127 | |
| 41 | P | A | -1.3265 | |
| 42 | G | A | -1.8800 | |
| 43 | K | A | -3.1660 | |
| 44 | E | A | -3.1686 | |
| 45 | R | A | -1.9002 | |
| 46 | E | A | -1.3616 | |
| 47 | G | A | 0.0000 | |
| 48 | V | A | 0.0000 | |
| 49 | A | A | 0.0000 | |
| 50 | A | A | 0.0000 | |
| 51 | L | A | 0.0000 | |
| 52 | S | A | 0.0000 | |
| 53 | T | A | -0.9350 | |
| 54 | S | A | -1.3179 | |
| 55 | D | A | -2.1261 | |
| 56 | G | A | -1.3195 | |
| 57 | T | A | -0.7841 | |
| 58 | T | A | -0.1388 | |
| 59 | Y | A | 0.2892 | |
| 60 | Y | A | -0.5790 | |
| 61 | A | A | 0.0000 | |
| 62 | D | A | -2.3785 | |
| 63 | S | A | -1.7651 | |
| 64 | V | A | 0.0000 | |
| 65 | K | A | -2.5441 | |
| 66 | G | A | -1.8352 | |
| 67 | R | A | -1.6615 | |
| 68 | F | A | 0.0000 | |
| 69 | T | A | -0.9860 | |
| 70 | V | A | 0.0000 | |
| 71 | S | A | -0.3229 | |
| 72 | L | A | -0.5973 | |
| 73 | D | A | -1.5538 | |
| 74 | N | A | -2.1343 | |
| 75 | A | A | -1.6399 | |
| 76 | K | A | -2.3707 | |
| 77 | N | A | -1.8753 | |
| 78 | T | A | 0.0000 | |
| 79 | V | A | 0.0000 | |
| 80 | Y | A | -0.5503 | |
| 81 | L | A | 0.0000 | |
| 82 | Q | A | -1.6324 | |
| 83 | M | A | 0.0000 | |
| 84 | N | A | -1.9199 | |
| 85 | S | A | -1.3323 | |
| 86 | L | A | 0.0000 | |
| 87 | K | A | -2.0449 | |
| 88 | P | A | -1.6603 | |
| 89 | E | A | -2.2066 | |
| 90 | D | A | 0.0000 | |
| 91 | T | A | -0.9838 | |
| 92 | A | A | 0.0000 | |
| 93 | L | A | -0.4401 | |
| 94 | Y | A | 0.0000 | |
| 95 | Y | A | -0.1842 | |
| 96 | C | A | 0.0000 | |
| 97 | A | A | 0.0000 | |
| 98 | A | A | 0.0000 | |
| 99 | A | A | 0.0000 | |
| 100 | T | A | 0.4812 | |
| 101 | Y | A | 1.0094 | |
| 102 | G | A | 0.5887 | |
| 103 | I | A | 0.0000 | |
| 104 | W | A | 1.7723 | |
| 105 | Y | A | 2.2246 | |
| 106 | P | A | 0.0000 | |
| 107 | L | A | 1.2900 | |
| 108 | T | A | 1.2135 | |
| 109 | W | A | 1.0187 | |
| 110 | W | A | 1.5472 | |
| 111 | A | A | 0.0000 | |
| 112 | Y | A | 0.0000 | |
| 113 | G | A | 0.3292 | |
| 114 | Y | A | 0.1694 | |
| 115 | W | A | 0.3075 | |
| 116 | G | A | -0.0806 | |
| 117 | Q | A | -0.8739 | |
| 118 | G | A | 0.0000 | |
| 119 | T | A | 0.0000 | |
| 120 | Q | A | -1.2599 | |
| 121 | V | A | 0.0000 | |
| 122 | T | A | -0.7456 | |
| 123 | V | A | -0.8248 |