| Chain sequence(s) |
H: QVQLVESGGGLVQPGGSLRLSCAASQFTFSVYYMSWVRQAPGKGPEWVSTISPGGDITRYADSVKGRFTISRDNAKKTLYLQMNNLKPEDTALYVCARGSAGSGLRGQGTQVTVSS
input PDB |
| Selected Chain(s) | H |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with H chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:20)
[INFO] Main: Simulation completed successfully. (00:01:21)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | H | -1.5363 | |
| 2 | V | H | -1.1423 | |
| 3 | Q | H | -1.5222 | |
| 4 | L | H | 0.0000 | |
| 5 | V | H | 0.2600 | |
| 6 | E | H | 0.0000 | |
| 7 | S | H | -0.5858 | |
| 8 | G | H | -0.9591 | |
| 9 | G | H | -0.5189 | |
| 11 | G | H | 0.1322 | |
| 12 | L | H | 1.1105 | |
| 13 | V | H | 0.0388 | |
| 14 | Q | H | -1.4148 | |
| 15 | P | H | -1.7500 | |
| 16 | G | H | -1.8274 | |
| 17 | G | H | -1.2184 | |
| 18 | S | H | -1.2847 | |
| 19 | L | H | -0.6073 | |
| 20 | R | H | -1.2591 | |
| 21 | L | H | 0.0000 | |
| 22 | S | H | -0.2773 | |
| 23 | C | H | 0.0000 | |
| 24 | A | H | -0.4663 | |
| 25 | A | H | 0.0000 | |
| 26 | S | H | -1.3107 | |
| 27 | Q | H | -1.6441 | |
| 28 | F | H | -0.3242 | |
| 29 | T | H | 0.2172 | |
| 30 | F | H | 0.0000 | |
| 35 | S | H | 0.3982 | |
| 36 | V | H | 1.9837 | |
| 37 | Y | H | 1.4141 | |
| 38 | Y | H | 1.3571 | |
| 39 | M | H | 0.0000 | |
| 40 | S | H | 0.0000 | |
| 41 | W | H | 0.0000 | |
| 42 | V | H | -0.0547 | |
| 43 | R | H | 0.0000 | |
| 44 | Q | H | -1.3731 | |
| 45 | A | H | 0.0000 | |
| 46 | P | H | -1.0433 | |
| 47 | G | H | -1.4122 | |
| 48 | K | H | -2.0609 | |
| 49 | G | H | -1.6091 | |
| 50 | P | H | -1.1487 | |
| 51 | E | H | -0.8653 | |
| 52 | W | H | 0.0107 | |
| 53 | V | H | 0.0000 | |
| 54 | S | H | 0.0000 | |
| 55 | T | H | 0.0000 | |
| 56 | I | H | 0.0000 | |
| 57 | S | H | 0.0000 | |
| 58 | P | H | 0.6502 | |
| 59 | G | H | -0.4429 | |
| 62 | G | H | -0.7698 | |
| 63 | D | H | -1.0621 | |
| 64 | I | H | 0.6991 | |
| 65 | T | H | -0.2747 | |
| 66 | R | H | -1.7062 | |
| 67 | Y | H | -1.6709 | |
| 68 | A | H | -1.6596 | |
| 69 | D | H | -2.7169 | |
| 70 | S | H | -1.7474 | |
| 71 | V | H | 0.0000 | |
| 72 | K | H | -2.8993 | |
| 74 | G | H | -1.8765 | |
| 75 | R | H | -1.9546 | |
| 76 | F | H | 0.0000 | |
| 77 | T | H | -0.9605 | |
| 78 | I | H | 0.0000 | |
| 79 | S | H | -0.4181 | |
| 80 | R | H | -1.3564 | |
| 81 | D | H | -1.8185 | |
| 82 | N | H | -1.6982 | |
| 83 | A | H | -1.5857 | |
| 84 | K | H | -2.6015 | |
| 85 | K | H | -2.5316 | |
| 86 | T | H | -1.3496 | |
| 87 | L | H | 0.0000 | |
| 88 | Y | H | -0.3534 | |
| 89 | L | H | 0.0000 | |
| 90 | Q | H | -0.8476 | |
| 91 | M | H | 0.0000 | |
| 92 | N | H | -1.7656 | |
| 93 | N | H | -2.2877 | |
| 94 | L | H | 0.0000 | |
| 95 | K | H | -2.4479 | |
| 96 | P | H | -1.8642 | |
| 97 | E | H | -2.3064 | |
| 98 | D | H | 0.0000 | |
| 99 | T | H | -0.8566 | |
| 100 | A | H | 0.0000 | |
| 101 | L | H | -0.3508 | |
| 102 | Y | H | 0.0000 | |
| 103 | V | H | 0.0000 | |
| 104 | C | H | 0.0000 | |
| 105 | A | H | 0.0000 | |
| 106 | R | H | -0.7702 | |
| 107 | G | H | -0.5439 | |
| 108 | S | H | -0.2601 | |
| 109 | A | H | -0.4297 | |
| 114 | G | H | -0.6841 | |
| 115 | S | H | -0.7385 | |
| 116 | G | H | -0.9061 | |
| 117 | L | H | -0.7357 | |
| 118 | R | H | -1.7319 | |
| 119 | G | H | 0.0000 | |
| 120 | Q | H | -1.4008 | |
| 121 | G | H | 0.0000 | |
| 122 | T | H | -0.5975 | |
| 123 | Q | H | -0.8284 | |
| 124 | V | H | 0.0000 | |
| 125 | T | H | -0.1917 | |
| 126 | V | H | 0.0000 | |
| 127 | S | H | -0.7177 | |
| 128 | S | H | -0.5228 |