| Chain sequence(s) |
A: APMPKEEQRKLVEEIYEKIKELALKNNASEDTLMWLDVFYDSAMWMVEEDEPYEEVMMVFEIYISFVEGELKEELKKIIE
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:02)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:02)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:02)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:02)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:02)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:03:40)
[INFO] Main: Simulation completed successfully. (00:03:41)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | A | A | -0.0168 | |
| 2 | P | A | -0.1796 | |
| 3 | M | A | -0.5406 | |
| 4 | P | A | -1.5575 | |
| 5 | K | A | -2.8277 | |
| 6 | E | A | -3.3050 | |
| 7 | E | A | -2.9456 | |
| 8 | Q | A | -2.4132 | |
| 9 | R | A | -2.9279 | |
| 10 | K | A | -3.4829 | |
| 11 | L | A | -2.2405 | |
| 12 | V | A | 0.0000 | |
| 13 | E | A | -3.1918 | |
| 14 | E | A | -3.3382 | |
| 15 | I | A | -2.0090 | |
| 16 | Y | A | -2.6477 | |
| 17 | E | A | -3.6335 | |
| 18 | K | A | -3.0571 | |
| 19 | I | A | 0.0000 | |
| 20 | K | A | -2.3445 | |
| 21 | E | A | -2.7155 | |
| 22 | L | A | -1.8711 | |
| 23 | A | A | 0.0000 | |
| 24 | L | A | -0.7793 | |
| 25 | K | A | -2.0550 | |
| 26 | N | A | -2.0795 | |
| 27 | N | A | -1.6991 | |
| 28 | A | A | -1.3680 | |
| 29 | S | A | -1.6182 | |
| 30 | E | A | -2.3646 | |
| 31 | D | A | -2.2282 | |
| 32 | T | A | -0.8105 | |
| 33 | L | A | -0.4754 | |
| 34 | M | A | -0.0348 | |
| 35 | W | A | 0.6241 | |
| 36 | L | A | 0.0000 | |
| 37 | D | A | -0.4251 | |
| 38 | V | A | 0.6084 | |
| 39 | F | A | 0.5523 | |
| 40 | Y | A | -0.5087 | |
| 41 | D | A | -1.0661 | |
| 42 | S | A | -0.2960 | |
| 43 | A | A | 0.0000 | |
| 44 | M | A | -0.8775 | |
| 45 | W | A | -0.4212 | |
| 46 | M | A | 0.0000 | |
| 47 | V | A | 0.0000 | |
| 48 | E | A | -2.6214 | |
| 49 | E | A | -3.0985 | |
| 50 | D | A | -3.2904 | |
| 51 | E | A | -2.7278 | |
| 52 | P | A | -2.0578 | |
| 53 | Y | A | -1.5636 | |
| 54 | E | A | -2.2833 | |
| 55 | E | A | -2.1735 | |
| 56 | V | A | 0.0000 | |
| 57 | M | A | -0.7787 | |
| 58 | M | A | -0.7477 | |
| 59 | V | A | 0.0000 | |
| 60 | F | A | 0.0000 | |
| 61 | E | A | -1.4097 | |
| 62 | I | A | 0.3932 | |
| 63 | Y | A | 0.0000 | |
| 64 | I | A | 0.0000 | |
| 65 | S | A | 0.0414 | |
| 66 | F | A | 1.3581 | |
| 67 | V | A | 0.0000 | |
| 68 | E | A | -2.4348 | |
| 69 | G | A | -2.8621 | |
| 70 | E | A | -3.3761 | |
| 71 | L | A | 0.0000 | |
| 72 | K | A | -2.9755 | |
| 73 | E | A | -3.8738 | |
| 74 | E | A | -2.7765 | |
| 75 | L | A | 0.0000 | |
| 76 | K | A | -3.1117 | |
| 77 | K | A | -3.0482 | |
| 78 | I | A | -1.6983 | |
| 79 | I | A | -1.3182 | |
| 80 | E | A | -2.4669 |