| Chain sequence(s) |
L: KYPNGDLLLPFFRGD
input PDB |
| Selected Chain(s) | L |
| Distance of aggregation | 5 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with L chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:12)
[INFO] Main: Simulation completed successfully. (00:00:13)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 134 | K | L | -1.4619 | |
| 135 | Y | L | 0.9887 | |
| 136 | P | L | -0.1018 | |
| 137 | N | L | -1.3766 | |
| 138 | G | L | -1.0267 | |
| 139 | D | L | -1.8207 | |
| 140 | L | L | 0.2244 | |
| 141 | L | L | 1.7531 | |
| 142 | L | L | 1.7745 | |
| 143 | P | L | 0.5454 | |
| 144 | F | L | 2.2324 | |
| 145 | F | L | 1.9585 | |
| 146 | R | L | -1.5757 | |
| 147 | G | L | -0.9267 | |
| 148 | D | L | -1.8750 |