Project name: Lad-GGGGSGGGGS-SnapTag

Status: done

Started: 2025-06-30 19:26:07
Settings
Chain sequence(s) A: QVQLVQSGAEVKKPGASVKVSCKASGLTIEDYYMHWVRQAPGQGLEWMGWIDPENGDTEYGPKFQGRVTMTRDTSINTAYMELSRLRSDDTAVYYCAVHNAHYGTWFAYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCGGGGSGGGGSDKDCEMKRTTLDSPLGKLELSGCEQGLHEIIFLGKGTSAADAVEVPAPAAVLGGPEPLMQATAWLNAYFHQPEAIEEFPVPALHHPVFQQESFTRQVLWKLLKVVKFGEVISYSHLAALAGNPAATAAVKTALSGNPVPILIPCHRVVQGDLDVGGYEGGLAVKEWLLAHEGHRLGKPGLG
B: DVVMTQSPLSLPVTLGQPASISCRSSQSLLHSSGNTYLEWYQQRPGQSPRPLIYKISTRFSGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCFQGSHVPYTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
input PDB
Selected Chain(s) A,B
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:11:01)
[INFO]       Main:     Simulation completed successfully.                                          (00:11:07)
Show buried residues

Minimal score value
-3.8258
Maximal score value
1.3102
Average score
-0.6927
Total score value
-438.4654

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.3485
2 V A -0.6374
3 Q A -1.2573
4 L A 0.0000
5 V A -0.0138
6 Q A 0.0000
7 S A -0.5743
8 G A -0.9288
9 A A -0.8799
10 E A -1.4872
11 V A -1.0126
12 K A -1.6407
13 K A -2.5483
14 P A -2.4137
15 G A -2.0017
16 A A -1.6068
17 S A -1.6789
18 V A 0.0000
19 K A -2.0130
20 V A 0.0000
21 S A -0.5891
22 C A 0.0000
23 K A -0.6436
24 A A 0.0000
25 S A -0.6933
26 G A -0.8814
27 L A -0.6882
28 T A -0.7546
29 I A 0.0000
30 E A -2.2610
31 D A -2.3004
32 Y A -1.0311
33 Y A -0.4125
34 M A 0.0000
35 H A 0.0000
36 W A 0.0000
37 V A 0.0000
38 R A -0.4293
39 Q A -0.6818
40 A A -1.0317
41 P A -1.0149
42 G A -1.2110
43 Q A -1.7480
44 G A -1.1207
45 L A 0.0000
46 E A -0.7030
47 W A 0.0000
48 M A 0.0000
49 G A 0.0000
50 W A -0.2510
51 I A 0.0000
52 D A -2.0422
53 P A 0.0000
54 E A -3.4412
55 N A -2.9431
56 G A -2.4077
57 D A -2.6513
58 T A -1.2821
59 E A -0.8814
60 Y A -0.6839
61 G A 0.0000
62 P A -1.6238
63 K A -2.2342
64 F A 0.0000
65 Q A -2.0957
66 G A -1.6026
67 R A -1.5803
68 V A 0.0000
69 T A -0.7493
70 M A 0.0000
71 T A -0.7972
72 R A -1.4634
73 D A -1.1341
74 T A -0.8588
75 S A -0.0182
76 I A 0.5588
77 N A -0.2999
78 T A 0.0000
79 A A 0.0000
80 Y A -0.7438
81 M A 0.0000
82 E A -1.2639
83 L A 0.0000
84 S A -1.7729
85 R A -2.7141
86 L A 0.0000
87 R A -3.3737
88 S A -2.3228
89 D A -2.5381
90 D A 0.0000
91 T A -1.0016
92 A A 0.0000
93 V A 0.1353
94 Y A 0.0000
95 Y A 0.0000
96 C A 0.0000
97 A A 0.0000
98 V A 0.0000
99 H A 0.0000
100 N A 0.0000
101 A A -0.1410
102 H A -0.5271
103 Y A 0.7532
104 G A 0.1471
105 T A 0.0000
106 W A 0.0000
107 F A 0.0000
108 A A 0.3756
109 Y A 0.1724
110 W A -0.1003
111 G A 0.0000
112 Q A -1.3279
113 G A -0.5734
114 T A 0.0000
115 L A -0.1979
116 V A 0.0000
117 T A -1.0011
118 V A 0.0000
119 S A -1.3581
120 S A -0.9533
121 A A -0.5483
122 S A -0.3121
123 T A -0.1386
124 K A -0.3076
125 G A 0.0000
126 P A 0.0000
127 S A -0.4464
128 V A 0.0000
129 F A -0.4632
130 P A -0.9026
131 L A 0.0000
132 A A -1.2467
133 P A 0.0000
134 S A -0.8885
135 S A -0.5177
136 K A -0.9313
137 S A 0.0000
138 T A -0.6596
139 S A -0.6823
140 G A -0.7977
141 G A -0.8656
142 T A -0.6061
143 A A 0.0000
144 A A 0.0000
145 L A 0.0000
146 G A 0.0000
147 C A 0.0000
148 L A 0.0000
149 V A 0.0000
150 K A 0.0000
151 D A -0.2357
152 Y A 0.0000
153 F A 0.0000
154 P A 0.0000
155 E A -0.4125
156 P A -0.5974
157 V A -0.3215
158 T A -0.2795
159 V A -0.0694
160 S A -0.1933
161 W A 0.0000
162 N A -0.4839
163 S A -0.4882
164 G A -0.4737
165 A A -0.2192
166 L A 0.0412
167 T A -0.1507
168 S A -0.1615
169 G A -0.1851
170 V A 0.2007
171 H A -0.3014
172 T A 0.0345
173 F A 0.0000
174 P A -0.3110
175 A A 0.3051
176 V A 0.5793
177 L A 1.3102
178 Q A 0.3255
179 S A -0.0456
180 S A -0.1948
181 G A 0.0590
182 L A 0.2556
183 Y A 0.5836
184 S A 0.0000
185 L A 0.0000
186 S A 0.0000
187 S A 0.0000
188 V A 0.0000
189 V A 0.0000
190 T A -0.1219
191 V A 0.0000
192 P A -0.6038
193 S A -0.5771
194 S A -0.5750
195 S A -0.5410
196 L A -0.7948
197 G A -0.9432
198 T A -0.6391
199 Q A -1.0528
200 T A -0.9063
201 Y A 0.0000
202 I A -0.6408
203 C A 0.0000
204 N A -0.7130
205 V A 0.0000
206 N A -0.9310
207 H A 0.0000
208 K A -1.9495
209 P A -1.1248
210 S A 0.0000
211 N A -1.1261
212 T A 0.0000
213 K A -1.2744
214 V A 0.0000
215 D A -1.3053
216 K A -1.3720
217 K A -1.7279
218 V A 0.0000
219 E A -2.6981
220 P A -1.8024
221 K A -2.2673
222 S A -1.0881
223 C A -0.3981
224 G A -0.7969
225 G A -0.9225
226 G A -1.0797
227 G A -1.2328
228 S A -1.0318
229 G A -1.1915
230 G A -1.2002
231 G A -1.5863
232 G A -1.8007
233 S A -2.3879
234 D A -3.4457
235 K A -3.8258
236 D A -3.4572
237 C A -2.6968
238 E A -2.5626
239 M A -1.5151
240 K A -1.2039
241 R A -1.0639
242 T A 0.0000
243 T A -0.8367
244 L A 0.0000
245 D A -1.7807
246 S A 0.0000
247 P A -0.7175
248 L A 0.0000
249 G A -1.0476
250 K A -1.4065
251 L A 0.0000
252 E A -0.4081
253 L A 0.0000
254 S A 0.0000
255 G A 0.0000
256 C A 0.0000
257 E A -2.9224
258 Q A -2.4687
259 G A 0.0000
260 L A 0.0000
261 H A -0.5958
262 E A -0.5275
263 I A 0.0000
264 I A 0.5886
265 F A 0.1276
266 L A -0.1936
267 G A -1.0856
268 K A -1.9802
269 G A -1.2218
270 T A -1.0700
271 S A -0.9030
272 A A -0.4283
273 A A -0.5446
274 D A -1.5222
275 A A -0.4623
276 V A 0.3126
277 E A -1.3834
278 V A 0.0000
279 P A -0.7236
280 A A -0.7132
281 P A -0.3312
282 A A 0.3028
283 A A 0.6242
284 V A 0.7320
285 L A 1.2807
286 G A -0.0428
287 G A -1.0315
288 P A 0.0000
289 E A -2.4850
290 P A 0.0000
291 L A 0.0000
292 M A -0.2563
293 Q A -0.3069
294 A A 0.0000
295 T A 0.0000
296 A A 0.1860
297 W A 0.0000
298 L A 0.0000
299 N A -0.5888
300 A A 0.0000
301 Y A 0.0000
302 F A 0.0000
303 H A -1.3235
304 Q A -1.8015
305 P A -1.9527
306 E A -2.7039
307 A A -2.2337
308 I A 0.0000
309 E A -2.8299
310 E A -2.5664
311 F A -0.7749
312 P A -0.2881
313 V A 0.6394
314 P A 0.0000
315 A A -0.3919
316 L A -0.1989
317 H A -1.0890
318 H A -0.8672
319 P A -1.3477
320 V A -1.1505
321 F A 0.0000
322 Q A -2.3177
323 Q A -2.7377
324 E A -2.8207
325 S A -1.4551
326 F A -0.5995
327 T A -0.8348
328 R A -1.4424
329 Q A -0.9269
330 V A 0.0000
331 L A 0.0000
332 W A -0.3459
333 K A -0.6289
334 L A 0.0000
335 L A -0.4392
336 K A -1.3182
337 V A -0.0212
338 V A 0.0000
339 K A -1.6893
340 F A -1.1364
341 G A -1.3389
342 E A -1.5602
343 V A -0.6174
344 I A 0.0000
345 S A -0.9621
346 Y A -0.7663
347 S A -1.0292
348 H A -1.0417
349 L A 0.0000
350 A A 0.0000
351 A A -0.8288
352 L A -0.2891
353 A A -0.7587
354 G A -1.0827
355 N A -1.5681
356 P A -1.0791
357 A A -0.6147
358 A A -0.6319
359 T A -0.6865
360 A A -0.4048
361 A A -0.4748
362 V A 0.0000
363 K A -1.6559
364 T A -0.8764
365 A A 0.0000
366 L A 0.0000
367 S A -1.3677
368 G A -1.0287
369 N A -0.7661
370 P A -0.3496
371 V A 0.0000
372 P A -0.2948
373 I A 0.0000
374 L A 0.0000
375 I A 0.0000
376 P A 0.0000
377 C A 0.0000
378 H A 0.0000
379 R A 0.0000
380 V A 0.0000
381 V A 0.0000
382 Q A -1.5948
383 G A -1.2834
384 D A -1.7714
385 L A -0.1422
386 D A -1.0922
387 V A -0.6928
388 G A -0.6543
389 G A -1.0931
390 Y A -1.0868
391 E A -2.1220
392 G A -1.1457
393 G A -0.8873
394 L A 0.1074
395 A A 0.0222
396 V A 0.0000
397 K A 0.0000
398 E A -1.0550
399 W A -0.4628
400 L A 0.0000
401 L A 0.0000
402 A A -1.2011
403 H A -0.5874
404 E A 0.0000
405 G A -1.3293
406 H A -1.7614
407 R A -2.3379
408 L A 0.0000
409 G A 0.0000
410 K A -1.6032
411 P A -1.0016
412 G A -0.6405
413 L A 0.0423
414 G A -0.5463
1 D B -1.3375
2 V B 0.0000
3 V B 0.6809
4 M B 0.0000
5 T B -0.3902
6 Q B 0.0000
7 S B -0.1921
8 P B 0.3514
9 L B 1.1282
10 S B 0.1510
11 L B -0.1456
12 P B -0.7295
13 V B 0.0000
14 T B -0.9848
15 L B -0.7239
16 G B -1.2149
17 Q B -1.5478
18 P B -1.7853
19 A B 0.0000
20 S B -0.8454
21 I B 0.0000
22 S B -0.9254
23 C B 0.0000
24 R B -2.2883
25 S B 0.0000
26 S B -0.9962
27 Q B -1.4955
28 S B -0.8184
29 L B 0.0000
30 L B 0.7991
31 H B -0.0933
32 S B -0.3515
33 S B -0.4920
34 G B -0.4916
35 N B -0.4384
36 T B 0.0000
37 Y B -0.0110
38 L B 0.0000
39 E B 0.0000
40 W B 0.0000
41 Y B 0.0000
42 Q B 0.0000
43 Q B -1.0920
44 R B -2.0320
45 P B -1.5627
46 G B -1.6452
47 Q B -1.9818
48 S B -1.2724
49 P B 0.0000
50 R B -0.8502
51 P B 0.0000
52 L B 0.0000
53 I B 0.0000
54 Y B -0.2020
55 K B -0.7112
56 I B -0.5173
57 S B -0.6727
58 T B -0.7256
59 R B -1.4244
60 F B -0.5413
61 S B -0.5571
62 G B -0.8427
63 V B -0.9039
64 P B -1.2249
65 D B -2.3552
66 R B -2.0815
67 F B 0.0000
68 S B -1.3619
69 G B -0.9167
70 S B -0.9114
71 G B -1.0180
72 S B -0.6663
73 G B -0.6312
74 T B -1.4162
75 D B -2.0636
76 F B 0.0000
77 T B -1.1208
78 L B 0.0000
79 K B -2.0203
80 I B 0.0000
81 S B -2.2723
82 R B -2.9164
83 V B 0.0000
84 E B -2.3990
85 A B -2.2543
86 E B -2.9121
87 D B 0.0000
88 V B 0.0000
89 G B 0.0000
90 V B -0.2944
91 Y B 0.0000
92 Y B 0.0000
93 C B 0.0000
94 F B 0.0000
95 Q B 0.0000
96 G B 0.0000
97 S B 0.0000
98 H B -0.0942
99 V B 0.5651
100 P B -0.1893
101 Y B 0.3002
102 T B 0.0893
103 F B 0.0000
104 G B 0.0000
105 G B -0.3837
106 G B 0.0000
107 T B 0.0000
108 K B -0.7192
109 V B 0.0000
110 E B -1.2068
111 I B 0.0000
112 K B -1.1262
113 R B -0.7644
114 T B 0.0220
115 V B 0.3593
116 A B -0.0335
117 A B -0.1203
118 P B 0.0000
119 S B -0.2308
120 V B 0.0000
121 F B 0.0000
122 I B 0.0000
123 F B 0.0000
124 P B -0.4879
125 P B 0.0000
126 S B -1.3582
127 D B -2.4328
128 E B -2.0190
129 Q B 0.0000
130 L B -1.8769
131 K B -2.4588
132 S B -1.5007
133 G B -1.0799
134 T B -0.8312
135 A B 0.0000
136 S B 0.0000
137 V B 0.0000
138 V B 0.0000
139 C B 0.0000
140 L B 0.0000
141 L B 0.0000
142 N B 0.0000
143 N B -0.8679
144 F B 0.0000
145 Y B 0.0000
146 P B -1.5707
147 R B -2.7724
148 E B -3.1005
149 A B -2.2631
150 K B -2.3717
151 V B -0.9656
152 Q B -0.4844
153 W B 0.0000
154 K B -0.5561
155 V B 0.0000
156 D B -1.9271
157 N B -1.5581
158 A B -0.3361
159 L B 0.5538
160 Q B -0.3543
161 S B -0.6766
162 G B -1.2864
163 N B -1.6066
164 S B -1.4558
165 Q B -1.4811
166 E B -1.6236
167 S B -0.9001
168 V B -0.7993
169 T B -1.1763
170 E B -2.3572
171 Q B 0.0000
172 D B -2.0913
173 S B -2.5619
174 K B -2.7409
175 D B -1.7965
176 S B 0.0000
177 T B 0.0000
178 Y B 0.0000
179 S B 0.0000
180 L B 0.0000
181 S B 0.0000
182 S B 0.0000
183 T B -0.7201
184 L B 0.0000
185 T B -0.6281
186 L B -0.7399
187 S B -0.9375
188 K B -1.9198
189 A B -1.7566
190 D B -2.3281
191 Y B 0.0000
192 E B -3.5261
193 K B -3.5893
194 H B -2.9799
195 K B -3.2559
196 V B -1.4220
197 Y B 0.0000
198 A B 0.0000
199 C B 0.0000
200 E B -0.5332
201 V B 0.0000
202 T B -1.1756
203 H B 0.0000
204 Q B -1.7306
205 G B -0.4257
206 L B -0.2365
207 S B -0.4525
208 S B -0.4210
209 P B -0.5078
210 V B 0.0976
211 T B -0.3451
212 K B -0.7670
213 S B -0.6384
214 F B 0.0000
215 N B -1.7442
216 R B -2.4378
217 G B -1.8729
218 E B -2.0323
219 C B -0.7864
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Laboratory of Theory of Biopolymers 2018