Project name: query_structure

Status: done

Started: 2026-03-16 23:08:41
Settings
Chain sequence(s) A: ESCVFIPCITGVIGCSCSSNVCYLNGVPCG
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:02)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:02)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:02)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:02)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:02)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:14)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:15)
Show buried residues

Minimal score value
-0.7629
Maximal score value
3.0157
Average score
1.0629
Total score value
31.8867

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E A 0.2254
2 S A 0.9627
3 C A 1.7828
4 V A 2.6343
5 F A 3.0157
6 I A 2.4266
7 P A 1.4659
8 C A 1.9754
9 I A 2.6114
10 T A 2.0556
11 G A 1.8451
12 V A 2.9292
13 I A 2.9042
14 G A 1.1113
15 C A 0.0000
16 S A 0.6212
17 C A 0.7076
18 S A 0.0571
19 S A -0.2734
20 N A -0.0020
21 V A 0.4333
22 C A 0.0000
23 Y A 0.4760
24 L A 0.5021
25 N A -0.7629
26 G A -0.0635
27 V A 1.3073
28 P A 0.5476
29 C A 0.6102
30 G A -0.2195
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018