Project name: query_structure

Status: done

Started: 2026-03-16 19:56:32
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Chain sequence(s) B: AVYPKKTHWTAEITPNLHGSEVVVAGWVAHLGDYGRVKIVKVSDREGGAAVPVYLEERGKTPDHLFKVFAEELSREDVVVIKGIVEASEEQYGSATGVEIFPSEIWILNKA
input PDB
Selected Chain(s) B
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with B chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:13)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:14)
Show buried residues

Minimal score value
-3.0912
Maximal score value
2.2775
Average score
-0.7978
Total score value
-86.1577

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
0 A B 1.2099
1 V B 2.2775
2 Y B 1.7519
3 P B -0.0437
4 K B -1.5028
5 K B -1.0706
6 T B -1.1024
7 H B -0.6243
8 W B -0.2562
9 T B 0.0000
10 A B -0.7068
11 E B -1.2893
12 I B 0.0000
13 T B -1.0941
14 P B -1.5554
15 N B -1.8057
16 L B -1.4329
17 H B -1.8560
18 G B -1.3532
19 S B -1.3560
20 E B -1.8803
21 V B 0.0000
22 V B 0.0000
23 V B 0.0000
24 A B -0.0106
25 G B -0.1789
26 W B -0.9380
27 V B 0.0000
28 A B -1.1986
29 H B -1.2185
30 L B -0.6699
31 G B 0.0000
32 D B -1.3497
33 Y B -0.0854
34 G B -1.2398
35 R B -2.5105
36 V B -1.0404
37 K B -0.8306
38 I B -0.0641
39 V B 0.0000
40 K B -0.7406
41 V B 0.0000
42 S B 0.0000
43 D B -1.0533
44 R B -2.2479
45 E B -2.7551
46 G B -1.8245
47 G B -1.6545
48 A B -0.9493
49 A B -0.7537
50 V B 0.0000
51 P B 0.0000
52 V B 0.0000
53 Y B -0.0041
54 L B 0.0000
55 E B -2.0477
56 R B -2.9356
57 G B -2.3158
58 K B -2.5297
59 T B 0.0000
60 P B -2.1693
61 D B -3.0912
62 H B -2.3111
63 L B 0.0000
64 F B 0.0000
65 K B -2.6009
66 V B -1.4601
67 F B 0.0000
68 A B -1.5507
69 E B -2.2457
70 L B 0.0000
71 S B -2.0978
72 R B -2.9140
73 E B -2.8650
74 D B 0.0000
75 V B -0.4323
76 V B 0.0000
77 V B 0.0000
78 I B 0.0000
79 K B -1.0748
80 G B 0.0000
81 I B -0.4281
82 V B 0.0000
83 E B -1.2849
84 A B -1.2701
85 S B -1.1901
86 E B -1.8214
87 Q B -0.6254
88 Y B 0.5630
89 G B -0.1589
90 S B -0.2996
91 A B -0.3239
92 T B -0.4213
93 G B -1.0329
94 V B 0.0000
95 E B -0.5792
96 I B 0.0000
97 F B -0.1514
98 P B 0.0000
99 S B -0.6789
100 E B -0.5601
101 I B 0.0000
102 W B 0.9809
103 I B 0.3080
104 L B 0.5158
105 N B -1.5904
106 K B -2.7187
107 A B -1.7400
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Laboratory of Theory of Biopolymers 2018