Project name: RADA16-I_20

Status: done

Started: 2026-06-25 06:48:03
Settings
Chain sequence(s) A: RADARADARADARADA
C: RADARADARADARADA
B: RADARADARADARADA
E: RADARADARADARADA
D: RADARADARADARADA
G: RADARADARADARADA
F: RADARADARADARADA
I: RADARADARADARADA
H: RADARADARADARADA
K: RADARADARADARADA
J: RADARADARADARADA
M: RADARADARADARADA
L: RADARADARADARADA
O: RADARADARADARADA
N: RADARADARADARADA
P: RADARADARADARADA
input PDB
Selected Chain(s) A,C,B,E,D,G,F,I,H,K,J,M,L,O,N,P
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:05:32)
[INFO]       Main:     Simulation completed successfully.                                          (00:05:37)
Show buried residues

Minimal score value
-3.769
Maximal score value
0.0
Average score
-2.1253
Total score value
-544.0808

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 R A -2.9720
2 A A -2.1740
3 D A -3.0169
4 A A -2.8471
5 R A -2.8590
6 A A -2.5618
7 D A -3.3416
8 A A -2.9283
9 R A -3.3006
10 A A -2.8918
11 D A -3.6592
12 A A -3.2913
13 R A -3.4422
14 A A -2.4640
15 D A -2.9191
16 A A -1.6515
1 R B -2.5530
2 A B -2.2058
3 D B -2.0477
4 A B -1.8711
5 R B -2.0156
6 A B 0.0000
7 D B -2.0931
8 A B -1.7129
9 R B -2.4463
10 A B 0.0000
11 D B -2.5266
12 A B -2.2998
13 R B -3.3090
14 A B -2.6655
15 D B -3.3156
16 A B -2.4295
1 R C -2.6065
2 A C -2.0762
3 D C -2.0084
4 A C -1.9399
5 R C -2.0775
6 A C 0.0000
7 D C -1.9357
8 A C -1.7276
9 R C -2.6154
10 A C 0.0000
11 D C -2.4928
12 A C -2.2922
13 R C -3.0929
14 A C -2.4727
15 D C -2.7849
16 A C -1.4690
1 R D -2.5683
2 A D -1.8188
3 D D -1.9907
4 A D -1.9174
5 R D -2.0705
6 A D 0.0000
7 D D -2.0037
8 A D -1.7445
9 R D -2.6385
10 A D 0.0000
11 D D -2.5056
12 A D -2.2795
13 R D -3.0972
14 A D -2.4940
15 D D -2.7804
16 A D -1.4847
1 R E -2.5603
2 A E -1.8021
3 D E -1.9980
4 A E -1.9046
5 R E -2.0351
6 A E 0.0000
7 D E -1.9636
8 A E -1.6863
9 R E -2.5695
10 A E 0.0000
11 D E -2.4222
12 A E -2.2261
13 R E -3.0484
14 A E -2.4440
15 D E -2.7538
16 A E -1.4614
1 R F -2.5721
2 A F -1.7900
3 D F -1.9566
4 A F -1.9192
5 R F -2.0374
6 A F 0.0000
7 D F -1.9144
8 A F -1.6409
9 R F -2.4945
10 A F 0.0000
11 D F -2.3606
12 A F -2.1756
13 R F -3.0125
14 A F -2.4186
15 D F -2.7324
16 A F -1.4586
1 R G -2.5861
2 A G -1.7848
3 D G -1.9792
4 A G -1.9259
5 R G -2.0473
6 A G 0.0000
7 D G -1.9402
8 A G -1.6674
9 R G -2.5290
10 A G 0.0000
11 D G -2.4075
12 A G -2.2217
13 R G -3.0379
14 A G -2.4658
15 D G -2.7563
16 A G -1.4836
1 R H -2.5645
2 A H -1.7910
3 D H -1.9340
4 A H -1.9106
5 R H -2.0439
6 A H 0.0000
7 D H -1.9364
8 A H -1.7612
9 R H -2.5076
10 A H 0.0000
11 D H -2.3730
12 A H -2.1892
13 R H -3.0212
14 A H -2.4572
15 D H -2.7529
16 A H -1.4717
1 R I -2.5433
2 A I -1.7328
3 D I -1.8784
4 A I -1.8556
5 R I -1.9992
6 A I 0.0000
7 D I -1.9351
8 A I -1.6402
9 R I -2.5416
10 A I 0.0000
11 D I -2.4129
12 A I -2.2215
13 R I -3.0399
14 A I -2.4544
15 D I -2.7549
16 A I -1.4818
1 R J -2.5662
2 A J -1.8114
3 D J -1.9220
4 A J -1.8544
5 R J -1.9824
6 A J 0.0000
7 D J -1.8687
8 A J -1.5707
9 R J -2.3588
10 A J 0.0000
11 D J -2.3279
12 A J -2.1546
13 R J -2.9990
14 A J -2.4099
15 D J -2.7244
16 A J -1.4715
1 R K -2.6117
2 A K -1.8207
3 D K -1.9683
4 A K -1.9117
5 R K -1.9945
6 A K 0.0000
7 D K -1.8950
8 A K -1.7515
9 R K -2.4696
10 A K 0.0000
11 D K -2.4150
12 A K -2.2197
13 R K -3.0491
14 A K -2.4299
15 D K -2.7561
16 A K -1.4967
1 R L -2.6373
2 A L -2.1073
3 D L -2.0218
4 A L -1.9232
5 R L -2.1425
6 A L 0.0000
7 D L -1.9428
8 A L -1.6807
9 R L -2.5350
10 A L 0.0000
11 D L -2.4520
12 A L -2.2268
13 R L -3.0781
14 A L -2.4694
15 D L -2.7697
16 A L -1.4930
1 R M -2.5701
2 A M -1.9780
3 D M -1.9129
4 A M -1.8521
5 R M -2.0897
6 A M 0.0000
7 D M -1.7056
8 A M -1.5605
9 R M -2.3287
10 A M 0.0000
11 D M -2.4762
12 A M -2.1845
13 R M -3.1190
14 A M -2.4820
15 D M -2.7702
16 A M -1.4754
1 R N -2.4877
2 A N -1.7245
3 D N -1.8802
4 A N -1.7255
5 R N -1.9950
6 A N 0.0000
7 D N -1.8127
8 A N -1.6084
9 R N -2.2290
10 A N 0.0000
11 D N -2.3628
12 A N -2.1903
13 R N -3.1496
14 A N -2.4680
15 D N -2.7558
16 A N -1.4936
1 R O -2.5306
2 A O -2.1632
3 D O -2.4569
4 A O -2.2259
5 R O -3.1133
6 A O -2.6950
7 D O -2.4521
8 A O -2.6172
9 R O -3.4645
10 A O -3.4670
11 D O -3.7690
12 A O -2.9948
13 R O -3.5770
14 A O -2.9774
15 D O -2.7767
16 A O -1.6127
1 R P -3.2620
2 A P -2.7664
3 D P -3.4231
4 A P -2.9378
5 R P -3.7004
6 A P -3.2663
7 D P -3.6231
8 A P -3.2264
9 R P -3.7517
10 A P -3.3055
11 D P -3.6997
12 A P -3.0710
13 R P -3.3355
14 A P -2.4985
15 D P -2.7731
16 A P -1.6731
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Laboratory of Theory of Biopolymers 2018