| Chain sequence(s) |
A: FFGHKFG
C: FFGHKFG B: FFGHKFG E: FFGHKFG D: FFGHKFG G: FFGHKFG F: FFGHKFG I: FFGHKFG H: FFGHKFG K: FFGHKFG J: FFGHKFG L: FFGHKFG input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:02:16)
[INFO] Main: Simulation completed successfully. (00:02:18)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | F | A | 2.9723 | |
| 2 | F | A | 3.4085 | |
| 3 | G | A | 1.4649 | |
| 4 | H | A | 0.1901 | |
| 5 | K | A | -1.0230 | |
| 6 | F | A | 0.0000 | |
| 7 | G | A | -1.0042 | |
| 1 | F | B | 3.3287 | |
| 2 | F | B | 3.3927 | |
| 3 | G | B | 1.2144 | |
| 4 | H | B | 0.1177 | |
| 5 | K | B | -0.6341 | |
| 6 | F | B | -0.2281 | |
| 7 | G | B | -0.6508 | |
| 1 | F | C | 3.1682 | |
| 2 | F | C | 3.1708 | |
| 3 | G | C | 0.8541 | |
| 4 | H | C | -0.4735 | |
| 5 | K | C | -1.0101 | |
| 6 | F | C | 0.2189 | |
| 7 | G | C | -0.3987 | |
| 1 | F | D | 2.9847 | |
| 2 | F | D | 3.1615 | |
| 3 | G | D | 1.1488 | |
| 4 | H | D | -0.0289 | |
| 5 | K | D | -1.0395 | |
| 6 | F | D | 0.0000 | |
| 7 | G | D | -0.8986 | |
| 1 | F | E | 2.5683 | |
| 2 | F | E | 3.1045 | |
| 3 | G | E | 1.2425 | |
| 4 | H | E | -0.0479 | |
| 5 | K | E | -1.1892 | |
| 6 | F | E | 0.0000 | |
| 7 | G | E | -1.1900 | |
| 1 | F | F | 2.5542 | |
| 2 | F | F | 3.0060 | |
| 3 | G | F | 1.2173 | |
| 4 | H | F | 0.0077 | |
| 5 | K | F | -1.0639 | |
| 6 | F | F | 0.0000 | |
| 7 | G | F | -1.1787 | |
| 1 | F | G | 2.6953 | |
| 2 | F | G | 3.1924 | |
| 3 | G | G | 1.3188 | |
| 4 | H | G | -0.1494 | |
| 5 | K | G | -1.5206 | |
| 6 | F | G | 0.0000 | |
| 7 | G | G | -1.2637 | |
| 1 | F | H | 3.1509 | |
| 2 | F | H | 3.1796 | |
| 3 | G | H | 1.0624 | |
| 4 | H | H | -0.4273 | |
| 5 | K | H | -1.6578 | |
| 6 | F | H | -1.1096 | |
| 7 | G | H | -1.0873 | |
| 1 | F | I | 3.0816 | |
| 2 | F | I | 3.0853 | |
| 3 | G | I | 0.7019 | |
| 4 | H | I | -0.7634 | |
| 5 | K | I | -1.7184 | |
| 6 | F | I | -0.8511 | |
| 7 | G | I | -0.9354 | |
| 1 | F | J | 2.9158 | |
| 2 | F | J | 3.2153 | |
| 3 | G | J | 1.1191 | |
| 4 | H | J | -0.1934 | |
| 5 | K | J | -1.2621 | |
| 6 | F | J | 0.0000 | |
| 7 | G | J | -1.1711 | |
| 1 | F | K | 2.5403 | |
| 2 | F | K | 2.9268 | |
| 3 | G | K | 1.1095 | |
| 4 | H | K | -0.0358 | |
| 5 | K | K | -1.1496 | |
| 6 | F | K | 0.0000 | |
| 7 | G | K | -1.1908 | |
| 1 | F | L | 2.5771 | |
| 2 | F | L | 3.0608 | |
| 3 | G | L | 1.1511 | |
| 4 | H | L | 0.0126 | |
| 5 | K | L | -1.0605 | |
| 6 | F | L | 0.0000 | |
| 7 | G | L | -1.2040 |