Project name: 9313f9223ee07a9

Status: done

Started: 2026-06-27 15:05:09
Settings
Chain sequence(s) A: KLDLKLDLKLDL
C: KLDLKLDLKLDL
B: KLDLKLDLKLDL
D: KLDLKLDLKLDL
input PDB
Selected Chain(s) A,C,B,D
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:28)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:29)
Show buried residues

Minimal score value
-2.8988
Maximal score value
0.7379
Average score
-1.4387
Total score value
-69.0554

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 K A -1.5548
2 L A -0.9718
3 D A -2.6619
4 L A -1.3586
5 K A -2.8988
6 L A -1.3884
7 D A -2.4476
8 L A -0.9090
9 K A -1.9776
10 L A -0.6335
11 D A -1.2701
12 L A 0.7379
1 K B -1.6914
2 L B -0.5178
3 D B -2.1312
4 L B -0.7104
5 K B -2.4214
6 L B -1.0795
7 D B -2.6517
8 L B -1.2588
9 K B -2.4232
10 L B -0.8297
11 D B -1.5078
12 L B 0.5273
1 K C -1.9571
2 L C -0.8688
3 D C -2.4603
4 L C -0.8650
5 K C -2.4809
6 L C -1.0869
7 D C -2.5601
8 L C -1.0117
9 K C -2.1175
10 L C -0.5856
11 D C -1.5434
12 L C 0.5409
1 K D -1.3756
2 L D -0.4685
3 D D -1.9343
4 L D -0.9804
5 K D -2.8328
6 L D -1.3953
7 D D -2.6115
8 L D -1.2305
9 K D -2.5689
10 L D -1.1670
11 D D -1.8155
12 L D 0.3511
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Laboratory of Theory of Biopolymers 2018