| Chain sequence(s) |
A: QLQLVESGGGLVQVGGSLRLSCAASGRTFSRYAMGWFRQAPGKEREFVAAISWSGDNTYYVDSVKGRFTISRDNTKNTVFLQMNSLKPEDTAVYFCAADGPVAGSWYYSPYEYEYDYWGQGTQVTVSS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:48)
[INFO] Main: Simulation completed successfully. (00:01:49)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | A | -1.8833 | |
| 2 | L | A | -1.6798 | |
| 3 | Q | A | -1.3054 | |
| 4 | L | A | 0.0000 | |
| 5 | V | A | 0.7665 | |
| 6 | E | A | 0.0000 | |
| 7 | S | A | -0.6325 | |
| 8 | G | A | -1.0161 | |
| 9 | G | A | -0.8124 | |
| 10 | G | A | -0.0171 | |
| 11 | L | A | 1.0927 | |
| 12 | V | A | 0.1873 | |
| 13 | Q | A | -0.8576 | |
| 14 | V | A | -0.5862 | |
| 15 | G | A | -0.9233 | |
| 16 | G | A | -0.6024 | |
| 17 | S | A | -0.9466 | |
| 18 | L | A | -0.9266 | |
| 19 | R | A | -2.1064 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.3741 | |
| 22 | C | A | 0.0000 | |
| 23 | A | A | -0.2776 | |
| 24 | A | A | 0.0000 | |
| 25 | S | A | -1.4612 | |
| 26 | G | A | -2.1161 | |
| 27 | R | A | -2.5107 | |
| 28 | T | A | -1.9556 | |
| 29 | F | A | 0.0000 | |
| 30 | S | A | -1.8801 | |
| 31 | R | A | -2.0907 | |
| 32 | Y | A | 0.0000 | |
| 33 | A | A | -0.4174 | |
| 34 | M | A | 0.0000 | |
| 35 | G | A | 0.0000 | |
| 36 | W | A | 0.0000 | |
| 37 | F | A | -0.2116 | |
| 38 | R | A | 0.0000 | |
| 39 | Q | A | -1.7479 | |
| 40 | A | A | -1.7755 | |
| 41 | P | A | -1.2851 | |
| 42 | G | A | -1.8131 | |
| 43 | K | A | -2.9694 | |
| 44 | E | A | -3.2666 | |
| 45 | R | A | -2.3838 | |
| 46 | E | A | -1.2936 | |
| 47 | F | A | 0.0000 | |
| 48 | V | A | 0.0000 | |
| 49 | A | A | 0.0000 | |
| 50 | A | A | 0.0000 | |
| 51 | I | A | 0.0000 | |
| 52 | S | A | -0.7429 | |
| 53 | W | A | -0.9762 | |
| 54 | S | A | -1.3262 | |
| 55 | G | A | -1.4878 | |
| 56 | D | A | -2.2704 | |
| 57 | N | A | -1.3119 | |
| 58 | T | A | -0.3862 | |
| 59 | Y | A | 0.4656 | |
| 60 | Y | A | -0.3529 | |
| 61 | V | A | -0.7959 | |
| 62 | D | A | -2.2712 | |
| 63 | S | A | -1.7686 | |
| 64 | V | A | 0.0000 | |
| 65 | K | A | -2.4693 | |
| 66 | G | A | -1.7780 | |
| 67 | R | A | -1.4132 | |
| 68 | F | A | 0.0000 | |
| 69 | T | A | -0.7531 | |
| 70 | I | A | 0.0000 | |
| 71 | S | A | -0.6222 | |
| 72 | R | A | -1.0969 | |
| 73 | D | A | -1.5239 | |
| 74 | N | A | -1.9395 | |
| 75 | T | A | -1.5466 | |
| 76 | K | A | -2.4185 | |
| 77 | N | A | -1.9993 | |
| 78 | T | A | 0.0000 | |
| 79 | V | A | 0.0000 | |
| 80 | F | A | -0.4463 | |
| 81 | L | A | 0.0000 | |
| 82 | Q | A | -1.2025 | |
| 83 | M | A | 0.0000 | |
| 84 | N | A | -1.3534 | |
| 85 | S | A | -1.0351 | |
| 86 | L | A | 0.0000 | |
| 87 | K | A | -1.8874 | |
| 88 | P | A | -1.6041 | |
| 89 | E | A | -2.1820 | |
| 90 | D | A | 0.0000 | |
| 91 | T | A | -0.8485 | |
| 92 | A | A | 0.0000 | |
| 93 | V | A | -0.3973 | |
| 94 | Y | A | 0.0000 | |
| 95 | F | A | -0.0705 | |
| 96 | C | A | 0.0000 | |
| 97 | A | A | 0.0000 | |
| 98 | A | A | 0.0000 | |
| 99 | D | A | 0.0000 | |
| 100 | G | A | -0.8260 | |
| 101 | P | A | -0.1420 | |
| 102 | V | A | 1.0829 | |
| 103 | A | A | 0.6659 | |
| 104 | G | A | 0.1230 | |
| 105 | S | A | 1.2661 | |
| 106 | W | A | 2.0098 | |
| 107 | Y | A | 2.3674 | |
| 108 | Y | A | 2.0883 | |
| 109 | S | A | 1.0504 | |
| 110 | P | A | 0.0000 | |
| 111 | Y | A | 0.5074 | |
| 112 | E | A | -1.2304 | |
| 113 | Y | A | -1.0174 | |
| 114 | E | A | -2.2162 | |
| 115 | Y | A | 0.0000 | |
| 116 | D | A | -2.0762 | |
| 117 | Y | A | -1.0413 | |
| 118 | W | A | -0.1019 | |
| 119 | G | A | -0.1243 | |
| 120 | Q | A | -0.8844 | |
| 121 | G | A | -0.4791 | |
| 122 | T | A | 0.0000 | |
| 123 | Q | A | -0.9749 | |
| 124 | V | A | 0.0000 | |
| 125 | T | A | -0.1474 | |
| 126 | V | A | 0.0000 | |
| 127 | S | A | -0.4661 | |
| 128 | S | A | -0.5548 |