Project name: CLD_polimerization_test_1

Status: done

Started: 2025-07-22 16:43:33
Settings
Chain sequence(s) A: KIERGTILTQPGVFGVFTMFKLRPDWNKVPAMERKGAAEEVKKLIEKHKDNVLVDLYLTRGLETNSDFFFRINAYDLAKAQTFMREFRSTTIGKNADVFETLVGVTKPLNYISKDKSPGLNAGLSSATYSGPAPRYVIVIPVKKNAEWWNMSPEERLKEMEVHTTPTLAYLVNVKRKLYHSTGLDDTDFITYFETDDLTAFNNLMLSLAQTTLGTIHSPEDVIKALAD
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:04:05)
[INFO]       Main:     Simulation completed successfully.                                          (00:04:06)
Show buried residues

Minimal score value
-4.3519
Maximal score value
0.6438
Average score
-0.976
Total score value
-222.536

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
8 K A -3.0958
9 I A -2.5512
10 E A -3.3609
11 R A -2.5605
12 G A -1.8099
13 T A -1.3870
14 I A 0.0000
15 L A -0.7379
16 T A -0.8291
17 Q A -0.9541
18 P A -0.9381
19 G A -0.7883
20 V A 0.0000
21 F A 0.0775
22 G A 0.0000
23 V A 0.0000
24 F A 0.0000
25 T A 0.0000
26 M A 0.0000
27 F A 0.0000
28 K A -1.8451
29 L A -1.7136
30 R A -2.1602
31 P A -1.5705
32 D A -1.9775
33 W A 0.0000
34 N A -2.6482
35 K A -2.6088
36 V A -1.5676
37 P A -1.0421
38 A A -1.1081
39 M A -0.2799
40 E A -1.5064
41 R A -2.1816
42 K A -2.7784
43 G A -1.9292
44 A A 0.0000
45 A A 0.0000
46 E A -2.7285
47 E A -2.3887
48 V A 0.0000
49 K A -2.8816
50 K A -3.6728
51 L A -2.6019
52 I A -2.7851
53 E A -3.9295
54 K A -3.7888
55 H A -3.3592
56 K A -4.3519
57 D A -4.2600
58 N A -2.7013
59 V A 0.0000
60 L A -1.4297
61 V A 0.0000
62 D A 0.0000
63 L A 0.0000
64 Y A 0.0000
65 L A -0.5575
66 T A 0.0000
67 R A -2.1856
68 G A -1.1558
69 L A -0.4152
70 E A -1.2111
71 T A -1.2796
72 N A -1.4146
73 S A 0.0000
74 D A 0.0000
75 F A 0.0000
76 F A 0.0000
77 F A 0.0000
78 R A 0.0000
79 I A 0.0000
80 N A 0.0000
81 A A 0.0000
82 Y A 0.5099
83 D A -0.9264
84 L A -0.3891
85 A A -0.7859
86 K A -1.7342
87 A A 0.0000
88 Q A -1.6541
89 T A -1.5674
90 F A 0.0000
91 M A 0.0000
92 R A -3.0909
93 E A -2.3202
94 F A 0.0000
95 R A -3.3290
96 S A -2.2093
97 T A 0.0000
98 T A -1.4461
99 I A 0.0000
100 G A 0.0000
101 K A -2.6375
102 N A 0.0000
103 A A -1.9739
104 D A -2.1897
105 V A -0.4385
106 F A 0.6438
107 E A -0.3847
108 T A -0.0580
109 L A 0.0000
110 V A -0.0120
111 G A 0.0000
112 V A 0.0000
113 T A 0.0000
114 K A -1.6668
115 P A -0.6986
116 L A 0.1054
117 N A -1.1197
118 Y A -1.5778
119 I A 0.0000
120 S A -1.8619
121 K A -2.9342
122 D A -3.5260
123 K A -3.0021
124 S A 0.0000
125 P A -1.8818
126 G A -1.1654
127 L A -0.6210
128 N A -1.0712
129 A A -0.5597
130 G A -0.0925
131 L A 0.1517
132 S A -0.1508
133 S A -0.0709
134 A A 0.2301
135 T A 0.1511
136 Y A -0.0033
137 S A -0.3405
138 G A -0.6595
139 P A -0.9849
140 A A -0.6501
141 P A -1.4655
142 R A -1.9427
143 Y A -0.6939
144 V A 0.0000
145 I A 0.0000
146 V A 0.0000
147 I A 0.2579
148 P A -0.2645
149 V A -0.7498
150 K A -2.2480
151 K A -1.9166
152 N A -2.3931
153 A A -1.7709
154 E A -2.4011
155 W A -1.6882
156 W A -0.8382
157 N A -1.8054
158 M A -1.3468
159 S A -1.4750
160 P A -2.0611
161 E A -3.2413
162 E A -3.2459
163 R A -2.2868
164 L A -2.5574
165 K A -3.0982
166 E A -2.5678
167 M A -1.4215
168 E A -1.0349
169 V A 0.3927
170 H A -0.2086
171 T A 0.0000
172 T A 0.3405
173 P A 0.2294
174 T A 0.0000
175 L A 0.4109
176 A A 0.3670
177 Y A 0.0678
178 L A 0.2240
179 V A 0.4878
180 N A -0.6847
181 V A 0.0000
182 K A -1.2466
183 R A -1.0858
184 K A -0.4967
185 L A 0.3313
186 Y A 0.0000
187 H A -0.2048
188 S A 0.0000
189 T A -0.8080
190 G A -0.5988
191 L A -0.0383
192 D A -1.1447
193 D A -2.1868
194 T A -1.5415
195 D A 0.0000
196 F A -0.2337
197 I A 0.0000
198 T A 0.2267
199 Y A 0.0000
200 F A 0.0000
201 E A -1.0714
202 T A 0.0000
203 D A -1.6056
204 D A -1.4672
205 L A -0.9041
206 T A -1.0003
207 A A -0.8614
208 F A 0.0000
209 N A -1.3349
210 N A -1.0181
211 L A 0.0000
212 M A 0.2017
213 L A 0.5792
214 S A 0.0457
215 L A 0.5472
216 A A 0.1950
217 Q A -0.5818
231 T A 0.0993
232 T A 0.0000
233 L A 0.3438
234 G A 0.0000
235 T A -0.4338
236 I A -0.5899
237 H A -1.3505
238 S A -1.2270
239 P A -1.4318
240 E A -2.6395
241 D A -2.7107
242 V A 0.0000
243 I A 0.0000
244 K A -3.0316
245 A A -2.1005
246 L A 0.0000
247 A A 0.0000
248 D A -2.5857
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Laboratory of Theory of Biopolymers 2018