Project name: query_structure

Status: done

Started: 2026-03-17 00:13:33
Settings
Chain sequence(s) A: MPSPPGNLRVTDVTSTSVTLSWRHPFPTRGYRVEYREAGGEWKEVTVPLQPPTYTVTGLKPGTEYEPRVRAVNDGRNGRLLSIPSSVSVTTEIDKPSQ
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:11)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:11)
Show buried residues

Minimal score value
-3.609
Maximal score value
1.6184
Average score
-1.0315
Total score value
-101.0838

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 1.3961
2 P A 0.0000
3 S A 0.6055
4 P A 0.1881
5 P A 0.0000
6 G A -1.7962
7 N A -2.3483
8 L A -1.8039
9 R A -2.3921
10 V A -1.0024
11 T A -1.0164
12 D A -1.5328
13 V A -0.4959
14 T A -1.0122
15 S A -1.4147
16 T A -1.0393
17 S A -0.7898
18 V A 0.0000
19 T A -0.6562
20 L A 0.0000
21 S A -1.3665
22 W A 0.0000
23 R A -2.3599
24 H A 0.0000
25 P A 0.0000
26 F A 1.2732
27 P A 0.1023
28 T A 0.0000
29 R A -2.3986
30 G A -1.8144
31 Y A 0.0000
32 R A -1.2851
33 V A 0.0000
34 E A -1.9228
35 Y A 0.0000
36 R A -2.3256
37 E A -2.2175
38 A A -1.4734
39 G A -1.3287
40 G A -1.8709
41 E A -2.5577
42 W A -2.0237
43 K A -2.7488
44 E A -2.3599
45 V A -0.9370
46 T A -0.5987
47 V A 0.0000
48 P A -0.9329
49 L A -1.1108
50 Q A -1.4964
51 P A -1.1550
52 P A -0.9745
53 T A -0.6595
54 Y A 0.0428
55 T A -0.1459
56 V A 0.0000
57 T A -0.5221
58 G A -0.9323
59 L A 0.0000
60 K A -2.4276
61 P A -1.9051
62 G A -1.3442
63 T A -1.6192
64 E A -2.6981
65 Y A 0.0000
66 E A -1.3203
67 P A 0.0000
68 R A -1.0050
69 V A 0.0000
70 R A -0.4225
71 A A 0.0000
72 V A 0.0000
73 N A -1.9605
74 D A -3.6090
75 G A -2.6011
76 R A -3.1953
77 N A -2.8931
78 G A -2.6990
79 R A -3.1560
80 L A -1.0679
81 L A 0.2046
82 S A 0.0000
83 I A 1.6184
84 P A 0.2805
85 S A -0.3459
86 S A -0.4938
87 V A -0.4113
88 S A -0.8563
89 V A 0.0000
90 T A -1.2011
91 T A 0.0000
92 E A -1.6694
93 I A -0.7080
94 D A -2.5399
95 K A -2.6760
96 P A -1.7559
97 S A -1.7027
98 Q A -1.6923
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018