Project name: TIM3-NB3

Status: done

Started: 2025-07-25 11:58:40
Settings
Chain sequence(s) A: MELGLSLVVLAALLQGVLAEVQLVESGGGLVQAGGSLRLSCAASGFTLDYYAIGWFRQAPGKEREGVSCISSSDGSTYYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCATDPNTDYGLEDLNPQEYDYWGQGTQVTVSSESSSAPTLFPLASCESPVSDESPVALGCLARDFLPGSITFSWSYPNGIAVSSQSIKTFPSVLREGKYVATSQVLLPSQSVLQGSELICKVQHSKGNSDMVVPLPVILDLPPSVTLFMPPRDGFSGTSKRTSKLICQATDFSPREISVS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:02)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:02)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:02)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:03:37)
[INFO]       Main:     Simulation completed successfully.                                          (00:03:40)
Show buried residues

Minimal score value
-3.4286
Maximal score value
4.1452
Average score
-0.4557
Total score value
-133.9643

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 0.8104
2 E A -0.1083
3 L A 1.7155
4 G A 1.7934
5 L A 2.9198
6 S A 2.5634
7 L A 3.5868
8 V A 3.9814
9 V A 3.9935
10 L A 4.1452
11 A A 2.8502
12 A A 2.4104
13 L A 3.0420
14 L A 2.3237
15 Q A 0.5073
16 G A 1.0587
17 V A 2.0788
18 L A 1.6666
19 A A 0.3454
20 E A -1.1627
21 V A -0.5349
22 Q A -0.8738
23 L A 0.0000
24 V A 0.7606
25 E A 0.0000
26 S A -0.4911
27 G A -1.0224
28 G A -0.7274
29 G A -0.4326
30 L A -0.2122
31 V A 0.0000
32 Q A -1.8863
33 A A -1.8051
34 G A -1.3649
35 G A -1.0091
36 S A -1.2999
37 L A -1.2470
38 R A -2.2654
39 L A 0.0000
40 S A -0.4812
41 C A 0.0000
42 A A -0.1448
43 A A 0.0000
44 S A -0.5016
45 G A -0.3724
46 F A -0.0284
47 T A -0.3163
48 L A 0.0000
49 D A -0.7958
50 Y A 0.5510
51 Y A 0.0786
52 A A 0.0000
53 I A 0.0000
54 G A 0.0000
55 W A 0.0000
56 F A 0.0000
57 R A 0.0000
58 Q A -1.7390
59 A A -1.7638
60 P A -1.1084
61 G A -1.8128
62 K A -3.2627
63 E A -3.4286
64 R A -2.5694
65 E A -2.3311
66 G A -1.0127
67 V A 0.0000
68 S A 0.0000
69 C A 0.0000
70 I A 0.0000
71 S A -0.8866
72 S A -0.8198
73 S A -1.2269
74 D A -2.1593
75 G A -1.4706
76 S A -1.0904
77 T A -0.3959
78 Y A -0.4978
79 Y A -1.0323
80 A A -1.5561
81 D A -2.4261
82 S A -1.7334
83 V A 0.0000
84 K A -2.5476
85 G A -1.7482
86 R A -1.6883
87 F A 0.0000
88 T A -0.8976
89 I A 0.0000
90 S A -0.6398
91 R A -1.3321
92 D A -1.9820
93 N A -2.0826
94 A A -1.6434
95 K A -2.3336
96 N A -1.7730
97 T A 0.0000
98 V A 0.0000
99 Y A -0.7603
100 L A 0.0000
101 Q A -1.6274
102 M A 0.0000
103 N A -1.3838
104 S A -1.1699
105 L A 0.0000
106 K A -2.3966
107 P A -1.9572
108 E A -2.3327
109 D A 0.0000
110 T A 0.0000
111 A A 0.0000
112 V A 0.0485
113 Y A 0.0000
114 Y A -0.0818
115 C A 0.0000
116 A A 0.0000
117 T A 0.0000
118 D A -1.5302
119 P A -0.9930
120 N A -1.9577
121 T A -1.1057
122 D A -1.3101
123 Y A 0.0101
124 G A -1.2276
125 L A -1.5350
126 E A -2.4641
127 D A -2.7155
128 L A -1.6350
129 N A -2.0032
130 P A -2.0571
131 Q A -2.0818
132 E A -2.3318
133 Y A 0.0000
134 D A -2.1579
135 Y A -0.4447
136 W A -0.0776
137 G A -0.0749
138 Q A -0.9162
139 G A 0.0000
140 T A -0.2724
141 Q A -0.4479
142 V A 0.0000
143 T A 0.0000
144 V A 0.0000
145 S A 0.0000
146 S A -1.6643
147 E A -2.0647
148 S A -1.2560
149 S A -1.1793
150 S A -1.3305
151 A A -1.4732
152 P A 0.0000
153 T A -0.6172
154 L A 0.4009
155 F A 2.1013
156 P A 1.5453
157 L A 0.8759
158 A A 0.4681
159 S A -0.0977
160 C A -0.0534
161 E A -1.4319
162 S A -0.8842
163 P A -1.1277
164 V A -0.7525
165 S A -1.7955
166 D A -2.8882
167 E A -2.9746
168 S A -1.7082
169 P A -1.0210
170 V A 0.0000
171 A A 0.2725
172 L A 0.0000
173 G A 0.0000
174 C A 0.0000
175 L A 0.5547
176 A A 0.0000
177 R A -2.1366
178 D A -2.6611
179 F A 0.0000
180 L A 0.0000
181 P A -0.4637
182 G A 0.0000
183 S A -0.3430
184 I A -0.3090
185 T A -0.5679
186 F A -0.5584
187 S A -0.6020
188 W A 0.0000
189 S A 0.0000
190 Y A 0.3490
191 P A -0.3920
192 N A -0.9110
193 G A -0.0140
194 I A 1.5037
195 A A 0.8196
196 V A 0.4987
197 S A -0.2523
198 S A -1.0265
199 Q A -1.4656
200 S A -0.7663
201 I A -0.7562
202 K A -1.5015
203 T A -0.3711
204 F A 0.6683
205 P A 0.4749
206 S A 0.0574
207 V A -0.0269
208 L A -0.9838
209 R A -2.7091
210 E A -2.8327
211 G A -2.1778
212 K A -2.3694
213 Y A 0.0000
214 V A 0.0000
215 A A 0.0000
216 T A 0.2063
217 S A 0.0000
218 Q A -0.3358
219 V A 0.0000
220 L A 0.1335
221 L A 0.0000
222 P A -0.9604
223 S A 0.0000
224 Q A -1.7906
225 S A -0.8513
226 V A 0.0000
227 L A 0.5088
228 Q A -1.1870
229 G A -0.7854
230 S A -0.9932
231 E A -0.8467
232 L A 0.0000
233 I A 0.0968
234 C A 0.0000
235 K A -1.6908
236 V A 0.0000
237 Q A -2.2911
238 H A 0.0000
239 S A -1.4725
240 K A -2.2022
241 G A -1.8857
242 N A -2.6902
243 S A -2.1591
244 D A -2.0007
245 M A 0.4530
246 V A 1.3539
247 V A 0.0000
248 P A 0.3001
249 L A 0.7587
250 P A 1.3994
251 V A 3.0127
252 I A 2.8678
253 L A 2.1599
254 D A -0.3302
255 L A -0.3739
256 P A -0.3207
257 P A -0.5685
258 S A -0.0876
259 V A 1.5127
260 T A 1.7217
261 L A 3.1630
262 F A 2.6944
263 M A 1.9310
264 P A 0.0000
265 P A -1.1130
266 R A -2.2773
267 D A -2.4174
268 G A -1.4717
269 F A -0.4728
270 S A -1.2580
271 G A -1.2239
272 T A -0.8802
273 S A -1.7291
274 K A -2.6546
275 R A -2.7690
276 T A -1.5799
277 S A -0.7853
278 K A -0.6842
279 L A 1.8911
280 I A 1.9241
281 C A 2.1619
282 Q A 0.4947
283 A A 0.3982
284 T A -1.0169
285 D A -1.7193
286 F A -1.1046
287 S A -1.0651
288 P A -1.4401
289 R A -2.8830
290 E A -2.1049
291 I A 0.0213
292 S A 0.7220
293 V A 1.7300
294 S A 0.7036
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Laboratory of Theory of Biopolymers 2018